Allison J. Lopatkin - Publications, H-index & Citations

Allison J. Lopatkin

university of rochester

27H指数

63论文数

3.8K被引数

收录论文 38

发表时间

PlasAnn: a curated plasmid-specific database and annotation pipeline for standardized gene and function analysis

Nucleic Acids Research

IF13.1

2026-01-27

OAAI

Habibul Islam; Abhishek Sharma; Jordan Blair; Allison J Lopatkin

Population Ecology-Quantitative Microbial Risk Assessment (QMRA) Model for Antibiotic-Resistant and Susceptible E. coli in Recreational Water (vol 59, pg 4266, 2025)种群生态学-用于娱乐用水中抗生素耐药性和易感性大肠杆菌的定量微生物风险评估（QMRA）模型（卷59，页4266，2025）

ENVIRONMENTAL SCIENCE & TECHNOLOGY

IF11.3

2025-05-22

PREAI

Heida, Ashley; Hamilton, Mark T.; Gambino, Julia; Sanderson, Kaylee; Schoen, Mary E.; Jahne, Michael A.; Garland, Jay; Ramirez, Lucia; Quon, Hunter; Lopatkin, Allison J.; Hamilton, Kerry A.

Remodeling of Cellular Respiration and Insulin Signaling Are Part of a Shared Stress Response in Divergent Bee Species 细胞呼吸和胰岛素信号通路的重塑是不同蜜蜂物种共有的应激反应的一部分

INSECTS

IF2.9

2025-03-13

OAAI

Rondeau, Nicole C.; Raup-Collado, Joanna; Kogan, Helen V.; Cho, Rachel; Lovinger, Natalie; Wague, Fatoumata; Lopatkin, Allison J.; Texeira, Noelle G.; Rovnyak, David; Snow, Jonathan W.

Population Ecology-Quantitative Microbial Risk Assessment (QMRA) Model for Antibiotic-Resistant and Susceptible E. coli in Recreational Water 种群生态学-用于娱乐用水中抗生素耐药性和易感性大肠杆菌的定量微生物风险评估（QMRA）模型

ENVIRONMENTAL SCIENCE & TECHNOLOGY

IF11.3

2025-02-26

PREAI

Heida, Ashley; Hamilton, Mark T.; Gambino, Julia; Sanderson, Kaylee; Schoen, Mary E.; Jahne, Michael A.; Garland, Jay; Ramirez, Lucia; Quon, Hunter; Lopatkin, Allison J.; Hamilton, Kerry A.

The role of bacterial metabolism in antimicrobial resistance 细菌代谢在抗微生物耐药性中的作用

NATURE REVIEWS MICROBIOLOGY

IF103.3

2025-02-20

PREAI

Ahmad, Mehrose; Aduru, Sai Varun; Smith, Robert P.; Zhao, Zirui; Lopatkin, Allison J.

Purine and pyrimidine synthesis differently affect the strength of the inoculum effect for aminoglycoside and β-lactam antibiotics

MICROBIOLOGY SPECTRUM

IF3.8

2024-12-05

OAAI

Hernandez, Daniella M.; Marzouk, Melissa; Cole, Madeline; Fortoul, Marla C.; Kethireddy, Saipranavi Reddy; Contractor, Rehan; Islam, Habibul; Moulder, Trent; Kalifa, Ariane R.; Meneses, Estefania Marin; Mendoza, Maximiliano Barbosa; Thomas, Ruth; Masud, Saad; Pubien, Sheena; Milanes, Patricia; Diaz-Tang, Gabriela; Lopatkin, Allison J.; Smith, Robert P.

The metabolic burden associated with plasmid acquisition: An assessment of the unrecognized benefits to host cells

BIOESSAYS

IF2.7

2024-11-11

PREAI

Curtsinger, Heather D.; Martinez-Absalon, Sofia; Liu, Yuchang; Lopatkin, Allison J.

Selection and horizontal gene transfer underlie microdiversity-level heterogeneity in resistance gene fate during wastewater treatment (vol 15, 5412, 2024)

NATURE COMMUNICATIONS

IF15.7

2024-07-22

OAAI

Brown, Connor L.; Maile-Moskowitz, Ayella; Lopatkin, Allison J.; Xia, Kang; Logan, Latania K.; Davis, Benjamin C.; Zhang, Liqing; Vikesland, Peter J.; Pruden, Amy

Selection and horizontal gene transfer underlie microdiversity-level heterogeneity in resistance gene fate during wastewater treatment

NATURE COMMUNICATIONS

IF15.7

2024-06-26

OAAI

Brown, Connor L.; Maile-Moskowitz, Ayella; Lopatkin, Allison J.; Xia, Kang; Logan, Latania K.; Davis, Benjamin C.; Zhang, Liqing; Vikesland, Peter J.; Pruden, Amy

Sub-inhibitory antibiotic treatment selects for enhanced metabolic efficiency

MICROBIOLOGY SPECTRUM

IF3.8

2024-02-06

OAAI

Aduru, Sai Varun; Szenkiel, Karolina; Rahman, Anika; Ahmad, Mehrose; Fabozzi, Maya; Smith, Robert P.; Lopatkin, Allison J.

Tradeoff between lag time and growth rate drives the plasmid acquisition cost

NATURE COMMUNICATIONS

IF15.7

2023-04-24

OAAI

Ahmad, Mehrose; Prensky, Hannah; Balestrieri, Jacqueline; ElNaggar, Shahd; Gomez-Simmonds, Angela; Uhlemann, Anne-Catrin; Traxler, Beth; Singh, Abhyudai; Lopatkin, Allison J.

Interactions between metabolism and growth can determine the co-existence of Staphylococcus aureus and Pseudomonas aeruginosa 代谢和生长之间的相互作用可以确定金黄色葡萄球菌和铜绿假单胞菌的共存

ELIFE

IF0

2023-04-20

OAAI

Pajon, Camryn; Fortoul, Marla C.; Diaz-Tang, Gabriela; Meneses, Estefania Marin; Kalifa, Ariane R.; Sevy, Elinor; Mariah, Taniya; Toscan, Brandon; Marcelin, Maili; Hernandez, Daniella M.; Marzouk, Melissa M.; Lopatkin, Allison J.; Eldakar, Omar Tonsi; Smith, Robert P.

Disturbing the Spatial Organization of Biofilm Communities Affects Expression of agr-Regulated Virulence Factors in Staphylococcus aureus

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IF3.7

2023-02-28

OAAI

Barraza, Ivana; Pajon, Camryn; Diaz-Tang, Gabriela; Meneses, Estefania Marin; Abu-Rumman, Fatima; Garcia-Dieguez, Laura; Castro, Victor; Lopatkin, Allison J.; Smith, Robert P.

Growth productivity as a determinant of the inoculum effect for bactericidal antibiotics

SCIENCE ADVANCES

IF12.5

2022-12-16

OAAI

Diaz-Tang, Gabriela; Meneses, Estefania Marin; Patel, Kavish; Mirkin, Sophia; Garcia-Dieguez, Laura; Pajon, Camryn; Barraza, Ivana; Patel, Vijay; Ghali, Helana; Tracey, Angelica P.; Blanar, Christopher A.; Lopatkin, Allison J.; Smith, Robert P.

Metabolic genes on conjugative plasmids are highly prevalent in Escherichia coli and can protect against antibiotic treatment

ISME JOURNAL

IF10

2022-10-19

OAAI

Palomino, Alana; Gewurz, Danya; DeVine, Lela; Zajmi, Ujana; Moralez, Jenifer; Abu-Rumman, Fatima; Smith, Robert P.; Lopatkin, Allison J.

Horizontal gene transfer enables programmable gene stability in synthetic microbiota

NATURE CHEMICAL BIOLOGY

IF13.7

2022-09-01

OAAI

Wang, Teng; Weiss, Andrea; Aqeel, Ammara; Wu, Feilun; Lopatkin, Allison J.; David, Lawrence A.; You, Lingchong

Population structure of blaKPC-harbouring IncN plasmids at a New York City medical centre and evidence for multi-species horizontal transmission

JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

IF3.6

2022-04-13

OAAI

Gomez-Simmonds, Angela; Annavajhala, Medini K.; Tang, Nina; Rozenberg, Felix D.; Ahmad, Mehrose; Park, Heekuk; Lopatkin, Allison J.; Uhlemann, Anne-Catrin

Phylogenomics of two ST1 antibiotic-susceptible non-clinical Acinetobacter baumannii strains reveals multiple lineages and complex evolutionary history in global clone 1

MICROBIAL GENOMICS

IF4

2021-12-24

OAAI

Koong, Jonathan; Johnson, Claire; Rafei, Rayane; Hamze, Monzer; Myers, Garry S. A.; Kenyon, Johanna J.; Lopatkin, Allison J.; Hamidian, Mohammad

Honey bee sHSP are responsive to diverse proteostatic stresses and potentially promising biomarkers of honey bee stress

SCIENTIFIC REPORTS

IF3.9

2021-11-11

OAAI

Shih, Samantha R.; Bach, Dunay M.; Rondeau, Nicole C.; Sam, Jessica; Lovinger, Natalie L.; Lopatkin, Allison J.; Snow, Jonathan W.