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Artificial Intelligence Learns Protein Prediction
DOI:10.1101/cshperspect.a041458.png)
摘要
En 中文
From AlphaGO over StableDiffusion to ChatGPT, the recent decade of exponential advances in artificial intelligence (AI) has been altering life. In parallel, advances in computational biology are beginning to decode the language of life: AlphaFold2 leaped forward in protein structure prediction, and protein language models (pLMs) replaced expertise and evolutionary information from multiple sequence alignments with information learned from reoccurring patterns in databases of billions of proteins without experimental annotations other than the amino acid sequences. None of those tools could have been developed 10 years ago; all will increase the wealth of experimental data and speed up the cycle from idea to proof. AI is affecting molecular and medical biology at giant steps, and the most important might be the leap toward more powerful protein design.
Keyword:
SECONDARY STRUCTURE
RESIDUE CONTACTS
LANGUAGE
IDENTIFICATION
ALIGNMENT
HOMOLOGY
期刊
IF:
10.1
论文数:
3.0K
被引数:
1.3W
机构
引用论文
Predicting the structure of large protein complexes using AlphaFold and Monte Carlo tree search使用AlphaFold和蒙特卡洛树搜索预测大型蛋白质复合物的结构
NATURE COMMUNICATIONS
IF15.7
Fast and accurate protein structure search with Foldseek使用Foldseek快速准确的蛋白质结构搜索
NATURE BIOTECHNOLOGY
IF41.7
RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learningRCSB蛋白质数据库 (RCSB.org): 实验确定的PDB结构以及来自人工智能/机器学习的100万个蛋白质计算结构模型的交付
NUCLEIC ACIDS RESEARCH
IF13.1
Protein embeddings and deep learning predict binding residues for various ligand classes蛋白质嵌入和深度学习预测各种配体类别的结合残基
SCIENTIFIC REPORTS
IF3.9

