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Automatic deep learning-driven label-free image-guided patch clamp system

delete2021-02-10
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OA
AI
K
Krisztián Koós
G
Gáspár Oláh
T
Tamás Balassa
N
Norbert Mihut
M
Márton Rózsa
A
Attila Ozsvár
E
Ervin Tasnádi
P
Pál Barzó
N
Nóra Faragó
L
László G. Puskás
G
Gábor Molnár
J
József Molnár
G
Gábor Tamás
P
Péter Horváth *
DOI:10.1038/s41467-021-21291-4delete
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Abstract

Abstract

En 中文
Patch clamp recording of neurons is a labor-intensive and time-consuming procedure. Here, we demonstrate a tool that fully automatically performs electrophysiological recordings in label-free tissue slices. The automation covers the detection of cells in label-free images, calibration of the micropipette movement, approach to the cell with the pipette, formation of the whole-cell configuration, and recording. The cell detection is based on deep learning. The model is trained on a new image database of neurons in unlabeled brain tissue slices. The pipette tip detection and approaching phase use image analysis techniques for precise movements. High-quality measurements are performed on hundreds of human and rodent neurons. We also demonstrate that further molecular and anatomical analysis can be performed on the recorded cells. The software has a diary module that automatically logs patch clamp events. Our tool can multiply the number of daily measurements to help brain research. Patch clamp recording of neurons is slow and labor-intensive. Here the authors present a method for automated deep learning driven label-free image guided patch clamp physiology to perform measurements on hundreds of human and rodent neurons.
Keywords:
CELL
ELECTROPHYSIOLOGY
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Journal

Nature Communications cover
Nature Communications
IF:
15.7
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9.2W
Citations:
91.2W

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Hungarian Research Network
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hun-ren biological research center
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Hungarian Academy of Sciences
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