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Nature Methods 封面图

Nature Methods

IF32.1
论文数7424
被引数126721
期刊论文 7424
发表时间
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Enhanced cfDNA methylation profiling by detection and correction of jagged ends通过检测和校正锯齿状末端增强cfDNA甲基化谱分析
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deleteRui Wang; Emily G. Hamilton; Diego Almanza; Rene Bonilla; Takeshi Sugio; Angela Hui; Feng Tian; Nick A. Phillips; Chih Long Liu; Christopher H. Yoo; Stefan Alig; Cedric Rossi; Nicholas Juul; Emily L. Chen; Kevin J. Liu; Emily C. Shen; William Y. Shi; Mari Olsen; Xiaoman Kang; Viswam S. Nair; Heather A. Wakelee; Joseph B. Shrager; Shuyu Shi; Tushar Desai; Mohammad S. Esfahani; Maximilian Diehn; Ash A. Alizadeh
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Advancing morphological profiling with self-supervised learning through comparative insights into representation learning of cellular perturbations通过比较细胞扰动的表示学习，利用自监督学习推进形态学分析
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deleteWalid M. Abdelmoula; Tomé Albuquerque; Steffen Jaensch; Pushpak Pati; Michiel Van Dyck; Samantha J. Allen; Litao Zhang; Tommaso Mansi; Rui Liao
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Population-scale ancestral recombination graphs with tskit 1.0基于tskit 1.0的人口规模祖先重组图
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deleteBen Jeffery; Yan Wong; Kevin Thornton; Georgia Tsambos; Gertjan Bisschop; Yun Deng; E. Castedo Ellerman; Thomas B. Forest; Halley Fritze; Daniel Goldstein; Gregor Gorjanc; Graham Gower; Simon Gravel; Jeremy Guez; Benjamin C. Haller; Andrew D. Kern; Lloyd Kirk; Ivan Krukov; Hanbin Lee; Brieuc Lehmann; Hossameldin Loay; Matthew M. Osmond; Duncan S. Palmer; Nathaniel S. Pope; Aaron P. Ragsdale; Duncan Robertson; Murillo F. Rodrigues; Hugo van Kemenade; Clemens L. Weiß; Anthony Wilder Wohns; Shing H. Zhan; Brian C. Zhang; Marianne Aspbury; Nikolas A. Baya; Saurabh Belsare; Arjun Biddanda; Francisco Campuzano Jiménez; Ariella Gladstein; Bing Guo; Savita Karthikeyan; Warren W. Kretzschmar; Inés Rebollo; Kumar Saunack; Ruhollah Shemirani; Alexis Simon; Chris Smith; Jeet Sukumaran; Jonathan Terhorst; Per Unneberg; Ao Zhang; Peter Ralph; Jerome Kelleher
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CopilotJ: a conversational multi-agent system for intelligent and efficient bioimage analysisCopilotJ：一种用于智能高效生物图像分析的对话式多智能体系统
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deleteZhaoqi Lu; Zexin Yuan; Yan Chen; Zihao Chen; Zhihai Qiu; Haiyun Ren; Lei Sun; Yimin Wang
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Author Correction: Prediction of protein subcellular localization in single cells作者更正：单细胞中蛋白质亚细胞定位的预测
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deleteXinyi Zhang; Yitong Tseo; Yunhao Bai; Fei Chen; Caroline Uhler
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Aptamer-mediated multivalent endogenous ADAR1 recruitment for highly efficient RNA editing适配体介导的多价内源性ADAR1招募以实现高效RNA编辑
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deleteHan Zhu; Yang Zhou; Rentang Huang; Yi-Fan Wang; Yusi Hu; Lei Wang; Jia-Hui Jin; Qingqing Ye; Xin Liu; Zhi-Gang Wang; Hai-Yan Xie; Jin Billy Li; Dai-Wen Pang; Shu-Lin Liu
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Cellular-resolution three-photon ultra-deep imaging (TrUDI) of neuronal population activity at 2-mm depth in the mammalian brain哺乳动物脑内2毫米深度神经元群体活动的单细胞分辨率三光子超深成像（TrUDI）
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deleteKalyan Santra; Kevin Barber; Francesca Logiacco; M. Agustina Frechou; Arash Bellafard; Jyun-you Liou; Alipasha Vaziri
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Thyra: bridging mass spectrometry imaging and SpatialData for unified multimodal analysisThyra：连接质谱成像与SpatialData以实现统一的多模态分析
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deleteTheodoros Visvikis; Tim F. E. Hendriks; Wouter-Michiel Vierdag; Luca Marconato; Ron M. A. Heeren; Eva Cuypers
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Continuous mass photometry by single-molecule trapping单分子捕获连续质量光度法
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deleteDan Loewenthal; Roi Asor; Stephen Thorpe; Jack S. Peters; Konstantin C. Zouboulis; Merve Kaplan; Jan Christoph Thiele; Jack Bardzil; Seham Helmi; Sean A. Burnap; Tiong Kit Tan; Weston B. Struwe; Justin L. P. Benesch; Philipp Kukura
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Benchmarking segmentation methods for spatial transcriptomics空间转录组学分割方法的基准测试
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deleteXabier Martínez-de-Morentin; Sumeer A. Khan; Alberto Maillo; Robert Lehmann; Narsis A. Kiani; Vincenzo Lagani; David Gomez-Cabrero; Jesper Tegner
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CauTrigger: deciphering biological system state transitions by hierarchical causal decompositionCauTrigger：通过分层因果分解解析生物系统状态转换
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deleteChengming Zhang; Deyu Cai; Kazuyuki Aihara; Luonan Chen
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OpenDVP: an experimental and computational framework for community-empowered deep visual proteomicsOpenDVP：一个社区赋能的深度视觉蛋白质组学的实验与计算框架
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deleteJose Nimo; Sonja Fritzsche; Daniela S. Valdes; Minh Trinh; Tancredi Pentimalli; Melissa Klingeberg; Simon Schallenberg; Frederick Klauschen; Florian Herse; Stefan Florian; Nikolaus Rajewsky; Fabian Coscia
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Multi-immersion oblique plane microscope (miOPM): a reconfigurable platform for high-resolution light-sheet fluorescence microscopy多浸没倾斜平面显微镜(miOPM)：一种用于高分辨率光照片荧光显微镜的可重构平台
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deleteBingying Chen; Alfred Millett-Sikking; Bo-Jui Chang; Seweryn Gałecki; Stephan Daetwyler; Jenny Jiou; Jim Monistrol; Qionghua Shen; Felix Zhou; Hsin-Yu Lin; Edward Jenkins; Miriam C. Stein; Madeleine Marlar-Pavey; Gabriel Sturm; Alexander L. Li; Qiaosi Tang; Brian Y. Feng; Ulises Diaz; Yannan Chen; Aryaman Shalizi; Astrid Gillich; Jonathan R. Friedman; Raju Tomer; Wallace F. Marshall; Sarah Shahmoradian; Kevin M. Dean; Reto Fiolka
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Recent developments of fluorescent proteins and biosensors driven by cross-disciplinary insights跨学科洞见驱动的荧光蛋白与生物传感器最新进展
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deleteAnneliese M. M. Gest; Sohum Mehta; Jin Zhang
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AmpliconSuite: an end-to-end workflow for analyzing focal amplifications in cancer genomesAmpliconSuite：用于分析癌症基因组中焦点扩增的端到端工作流程
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deleteJens Luebeck; Ted Liefeld; Ivy Tsz-Lo Wong; Edwin Huang; Forrest Kim; Bhargavi Dameracharla; Michael Chan; Rohil Ahuja; Kyra Fetter; Dhruv Khatri; Kaiyuan Zhu; Thorin Tabor; Daniel Schreyer; Gino Prasad; Aditi Gnanasekar; Siavash Raeisi Dehkordi; Simone Spandau; Michał Adamaszek; Rishaan Kenkre; Tushar Agashe; Devika Torvi; Mădălina Giurgiu-Kraljič; Soyeon Kim; Hoon Kim; Peter Bailey; Roel G. W. Verhaak; Viraj Deshpande; Michael Reich; Paul S. Mischel; Jill P. Mesirov; Vineet Bafna
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LoL-align: sensitive and fast probabilistic protein structure alignmentLoL-align：敏感且快速的蛋白质结构比对概率算法
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deleteLasse Reifenrath; Michel van Kempen; Gyuri Kim; Soo Hyun Kim; Mohammadreza Radnezhad; Cameron L. M. Gilchrist; Milot Mirdita; Martin Steinegger; Johannes Söding
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Integrating sex as a biological variable into one’s science将性别作为生物学变量纳入科学研究
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deleteVivien Marx
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MassNet: billion-scale AI-ready mass spectral corpus empowering scalable deep learning in proteomicsMassNet：面向蛋白质组学的十亿级AI就绪质谱语料库，赋能可扩展深度学习
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deleteJun A.; Xiang Zhang; Xiaofan Zhang; Jiaqi Wei; Te Zhang; Yamin Deng; Pu Liu; Zongxiang Nie; Yiwen Yu; Yi Chen; Nanqing Dong; Zhiqiang Gao; Siqi Sun; Tiannan Guo
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The companion website配套网站
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deleteAndreas Bueckle; Matthias Stahl; Kelly Krause; Torsten Möller; Helena Klara Jambor
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Near-infrared photochromic miniprotein enables photoacoustic molecular imaging of acute inflammation and intracellular antigens近红外光致变色微蛋白实现急性炎症和细胞内抗体的光声分子成像
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deleteOlena S. Oliinyk; Yirui Xu; Jinhuan Luo; Kateryna O. Tokarchuk; Kyrylo Yu. Manoilov; Josie van de Klashorst; Matthew P. Eyring; Mu-en Wang; Ming Chen; Pengfei Song; John W. Hickey; Junjie Yao; Vladislav V. Verkhusha
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