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CloneCoordinate: Open-Source Software for Collaborative DNA Construction

delete2025-11-18
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OA
AI
E
Ethan Jeon
Z
Ziyang Shen
S
Santiago Christ
E
Evelyn Qi
I
Ida Fan
N
Nawon Lee
O
Odysseas Morgan
M
Madeline Ohl
D
Dylan Millson
M
M F Laker
A
Aspen Pierson
E
E. Garcia
Y
Yifan Zhang
A
Adeline Choi
A
Ashrita Iyengar
R
R. Young Chul Kim
J
Josh Lee
L
Linden Niedeck
V
Vanessa Oeien
M
Maliha Rashid
N
Nandini Seetharaman
A
Arnav Singh
D
Delaney Soble
J
Jenny Yu
K
K.-B. Yu
S
Simms Berdy
E
Ellia Chang
R
Robin Kitazono
S
Sofija Ortiz
D
D. R. Fraser Taylor
B
B W. Thuronyi *
DOI:10.1021/acssynbio.5c00582delete
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摘要

摘要

En 中文
定制DNA构建体在生命科学领域从未如此普遍或重要。因此,许多研究人员投入大量时间和精力进行分子克隆,并借助丰富的计算机辅助设计工具。然而,对于管理及记录构建过程、有效处理并减少挫折频率的支持却不足。为解决此需求,我们开发了CloneCoordinate,这是一款免费、开源的电子实验记录本,专为克隆设计,并完全基于Google Sheets实现。通过维护实时且自动优先化的任务列表、统一的物理样本库存以及标准化的数据结构,CloneCoordinate使个人或团队能够进行高效协作的克隆工作。我们展示了如何利用CloneCoordinate捕获的信息来排查装配问题,并提供基于数据的克隆效率洞察,为基于实际记录的自动化建议奠定基础。CloneCoordinate为如何执行并迭代改进实际DNA组装提供了新颖且独特的可及性模型。
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期刊

ACS Synthetic Biology 封面图
ACS Synthetic Biology
IF:
3.9
论文数:
3.9K
被引数:
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机构

W
williams college
学者数:
729
论文数: 602
被引数: 2
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