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Data-driven batch detection enhances single-cell omics data analysis
DOI:10.1016/j.cels.2024.09.011.png)
摘要
En 中文
在单细胞组学研究中,数据通常跨多个批次收集,导致批次效应:即引入噪声并扭曲数据分布的技术混淆因素。校正这些效应具有挑战性,原因在于其来源未知、存在非线性扭曲,以及难以将数据准确分配给最适合整合方法的数据批次。
期刊
IF:
7.7
论文数:
1.4K
被引数:
1.0W
机构
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引用论文
scDART: integrating unmatched scRNA-seq and scATAC-seq data and learning cross-modality relationship simultaneouslyscDART: 整合无与伦比的scrna-seq和scatac-seq数据,同时学习跨模态关系
GENOME BIOLOGY
IF9.4
scDisInFact: disentangled learning for integration and prediction of multi-batch multi-condition single-cell RNA-sequencing datascDisInFact: 用于多批次多条件单细胞RNA测序数据的整合和预测的解纠缠学习
NATURE COMMUNICATIONS
IF15.7
scMoMaT jointly performs single cell mosaic integration and multi-modal bio-marker detectionscMoMaT联合执行单细胞镶嵌整合和多模式生物标记检测
NATURE COMMUNICATIONS
IF15.7
Integration of scRNA-seq data by disentangled representation learning with condition domain adaptation通过解耦表示学习和条件领域自适应的scRNA-seq数据整合
Single-cell atlases: shared and tissue-specific cell types across human organs单细胞图谱: 跨人体器官的共享和组织特异性细胞类型
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