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Machine learning-aided generative molecular design

delete2024-06-18
delete11
PRE
AI
Y
Yuanqi Du
A
Arian R. Jamasb
J
Jeff Guo
T
Tianfan Fu
C
Charles B. Harris
Y
Yingheng Wang
C
Chenru Duan
P
Píetro Lió
P
Philippe Schwaller *
T
Tom L. Blundell *
DOI:10.1038/s42256-024-00843-5delete
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摘要

摘要

En 中文
Machine learning has provided a means to accelerate early-stage drug discovery by combining molecule generation and filtering steps in a single architecture that leverages the experience and design preferences of medicinal chemists. However, designing machine learning models that can achieve this on the fly to the satisfaction of medicinal chemists remains a challenge owing to the enormous search space. Researchers have addressed de novo design of molecules by decomposing the problem into a series of tasks determined by design criteria. Here we provide a comprehensive overview of the current state of the art in molecular design using machine learning models as well as important design decisions, such as the choice of molecular representations, generative methods and optimization strategies. Subsequently, we present a collection of practical applications in which the reviewed methodologies have been experimentally validated, encompassing both academic and industrial efforts. Finally, we draw attention to the theoretical, computational and empirical challenges in deploying generative machine learning and highlight future opportunities to better align such approaches to achieve realistic drug discovery end points. Data-driven generative methods have the potential to greatly facilitate molecular design tasks for drug design.
Keyword:
DRUG DESIGN
NEURAL-NETWORK
DISCOVERY
TRANSFORMER
EXPLORATION
DERIVATIVES
SOLUBILITY
STRATEGIES
INHIBITORS
ALGORITHM

期刊

Nature Machine Intelligence 封面图
Nature Machine Intelligence
IF:
23.9
论文数:
1.3K
被引数:
1.5W

机构

R
rensselaer polytechnic institute
学者数:
7.0K
论文数: 6.5K
被引数: 6
E
Ecole Polytechnique Federale de Lausanne
学者数:
1.7W
论文数: 1.3W
被引数: 25
U
University of Cambridge
学者数:
7.7W
论文数: 7.1W
被引数: 13.7W
S
swiss federal institutes of technology domain
学者数:
9.0W
论文数: 8.0W
被引数: 163
C
Cornell University
学者数:
6.3W
论文数: 5.4W
被引数: 10.9W
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