MiPanda: A Resource for Analyzin and Visualizing Next-Generation Sequencing Transcriptomics Data

doi:10.1016/j.neo.2018.09.001

2018-11-01

DOI：10.1016/j.neo.2018.09.001

原文链接

查看原文

摘要

En 中文

The Michigan Portal for the Analysis of NGS data portal (http://mipanda.org ) is an open-access online resource that provides the scientific community with access to the results of a large-scale computational analysis of thousands of high-throughput RNA sequencing (RNA-seq) samples. The portal provides access to gene expression profiles, enabling users to interrogate expression of genes across myriad normal and cancer tissues and cell lines. From these data, tissue- and cancer-specific expression patterns can be identified. Gene-gene coexpression profiles can also be interrogated. The current portal contains data for over 20,000 RNA-seq samples and will be continually updated.

Keyword:

INTEGRATIVE CLINICAL GENOMICS

CANCER

EXPRESSION

AI总结

对已上传原文的论文进行重点信息的提取，主要内容包括：简要概述、研究摘要、背景介绍、关键亮点、图文解析、展望与总结。

期刊

Neoplasia

IF:

7.7

论文数:

2.8K

被引数:

8.0K

机构

university of michigan system

学者数:

9.1W

论文数: 8.6W

被引数: 133

引用论文

Technology transfer from universities and research laboratories

Technological Forecasting and Social Change

IF0

1990-05-01

PREAI

Richard C. Dorf; Kirby K.F. Worthington

The UCSC Genome Browser database: 2014 update

NUCLEIC ACIDS RESEARCH

IF13.1

2013-11-21

620

OAAI

Karolchik, Donna; Barber, Galt P.; Casper, Jonathan; Clawson, Hiram; Cline, Melissa S.; Diekhans, Mark; Dreszer, Timothy R.; Fujita, Pauline A.; Guruvadoo, Luvina; Haeussler, Maximilian; Harte, Rachel A.; Heitner, Steve; Hinrichs, Angie S.; Learned, Katrina; Lee, Brian T.; Li, Chin H.; Raney, Brian J.; Rhead, Brooke; Rosenbloom, Kate R.; Sloan, Cricket A.; Speir, Matthew L.; Zweig, Ann S.; Haussler, David; Kuhn, Robert M.; Kent, W. James

The cBio Cancer Genomics Portal: An Open Platform for Exploring Multidimensional Cancer Genomics Data cBio癌症基因组学门户: 探索多维癌症基因组学数据的开放平台

CANCER DISCOVERY

IF33.3

2012-05-09

1.3W

OAAI

Cerami, Ethan; Gao, Jianjiong; Dogrusoz, Ugur; Gross, Benjamin E.; Sumer, Selcuk Onur; Aksoy, Buelent Arman; Jacobsen, Anders; Byrne, Caitlin J.; Heuer, Michael L.; Larsson, Erik; Antipin, Yevgeniy; Reva, Boris; Goldberg, Arthur P.; Sander, Chris; Schultz, Nikolaus

GENCODE: The reference human genome annotation for The ENCODE Project GENCODE: ENCODE项目的参考人类基因组注释

GENOME RESEARCH

IF5.5

2012-09-05

3.9K

OAAI

Harrow, Jennifer; Frankish, Adam; Gonzalez, Jose M.; Tapanari, Electra; Diekhans, Mark; Kokocinski, Felix; Aken, Bronwen L.; Barrell, Daniel; Zadissa, Amonida; Searle, Stephen; Barnes, If; Bignell, Alexandra; Boychenko, Veronika; Hunt, Toby; Kay, Mike; Mukherjee, Gaurab; Rajan, Jeena; Despacio-Reyes, Gloria; Saunders, Gary; Steward, Charles; Harte, Rachel; Lin, Michael; Howald, Cedric; Tanzer, Andrea; Derrien, Thomas; Chrast, Jacqueline; Walters, Nathalie; Balasubramanian, Suganthi; Pei, Baikang; Tress, Michael; Manuel Rodriguez, Jose; Ezkurdia, Iakes; van Baren, Jeltje; Brent, Michael; Haussler, David; Kellis, Manolis; Valencia, Alfonso; Reymond, Alexandre; Gerstein, Mark; Guigo, Roderic; Hubbard, Tim J.

The Genotype-Tissue Expression (GTEx) project 基因型-组织表达 (GTEx) 项目

NATURE GENETICS

IF31.8

2013-05-29

6.2K

OAAI

Lonsdale, John; Thomas, Jeffrey; Salvatore, Mike; Phillips, Rebecca; Lo, Edmund; Shad, Saboor; Hasz, Richard; Walters, Gary; Garcia, Fernando; Young, Nancy; Foster, Barbara; Moser, Mike; Karasik, Ellen; Gillard, Bryan; Ramsey, Kimberley; Sullivan, Susan; Bridge, Jason; Magazine, Harold; Syron, John; Fleming, Johnelle; Siminoff, Laura; Traino, Heather; Mosavel, Maghboeba; Barker, Laura; Jewell, Scott; Rohrer, Dan; Maxim, Dan; Filkins, Dana; Harbach, Philip; Cortadillo, Eddie; Berghuis, Bree; Turner, Lisa; Hudson, Eric; Feenstra, Kristin; Sobin, Leslie; Robb, James; Branton, Phillip; Korzeniewski, Greg; Shive, Charles; Tabor, David; Qi, Liqun; Groch, Kevin; Nampally, Sreenath; Buia, Steve; Zimmerman, Angela; Smith, Anna; Burges, Robin; Robinson, Karna; Valentino, Kim; Bradbury, Deborah; Cosentino, Mark; Diaz-Mayoral, Norma; Kennedy, Mary; Engel, Theresa; Williams, Penelope; Erickson, Kenyon; Ardlie, Kristin; Winckler, Wendy; Getz, Gad; DeLuca, David; MacArthur, Daniel; Kellis, Manolis; Thomson, Alexander; Young, Taylor; Gelfand, Ellen; Donovan, Molly; Meng, Yan; Grant, George; Mash, Deborah; Marcus, Yvonne; Basile, Margaret; Liu, Jun; Zhu, Jun; Tu, Zhidong; Cox, Nancy J.; Nicolae, Dan L.; Gamazon, Eric R.; Im, Hae Kyung; Konkashbaev, Anuar; Pritchard, Jonathan; Stevens, Matthew; Flutre, Timothee; Wen, Xiaoquan; Dermitzakis, Emmanouil T.; Lappalainen, Tuuli; Guigo, Roderic; Monlong, Jean; Sammeth, Michael; Koller, Daphne; Battle, Alexis; Mostafavi, Sara; McCarthy, Mark; Rivas, Manual; Maller, Julian; Rusyn, Ivan; Nobel, Andrew; Wright, Fred; Shabalin, Andrey; Feolo, Mike; Sharopova, Nataliya; Sturcke, Anne; Paschal, Justin; Anderson, James M.; Wilder, Elizabeth L.; Derr, Leslie K.; Green, Eric D.; Struewing, Jeffery P.; Temple, Gary; Volpi, Simona; Boyer, Joy T.; Thomson, Elizabeth J.; Guyer, Mark S.; Cathy Ng; Abdallah, Assya; Colantuoni, Deborah; Insel, Thomas R.; Koester, Susan E.; Little, A. Roger; Bender, Patrick K.; Lehner, Thomas; Yao, Yin; Compton, Carolyn C.; Vaught, Jimmie B.; Sawyer, Sherilyn; Lockhart, Nicole C.; Demchok, Joanne; Moore, Helen F.

Efficient Revised Simplex Method for SVM Training SVM训练的有效修正单纯形法

IEEE Transactions on Neural Networks

IF0

2011-10-01

PREAI

C. Sentelle; G. C. Anagnostopoulos; M. Georgiopoulos

UALCAN: A Portal for Facilitating Tumor Subgroup Gene Expression and Survival Analyses UALCAN: 促进肿瘤亚组基因表达和生存分析的门户

NEOPLASIA

IF7.7

2017-08-01

4.5K

OAAI

Chandrashekar, Darshan S.; Bashel, Bhuwan; Balasubramanya, Sai Akshaya Hodigere; Creighton, Chad J.; Ponce-Rodriguez, Israel; Chakravarthi, Balabhadrapatruni V. S. K.; Varambally, Sooryanarayana

Near-optimal probabilistic RNA-seq quantification

NATURE BIOTECHNOLOGY

IF41.7

2016-04-04

1.8K

PREAI

Bray, Nicolas L.; Pimentel, Harold; Melsted, Pall; Pachter, Lior

FirebrowseR: an R client to the Broad Institute's Firehose Pipeline

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2017-01-06

128