New adventures in spatial transcriptomics

doi:10.1016/j.devcel.2022.04.021

2022-05-01

Maayan Pour

Itai Yanai *

DOI：10.1016/j.devcel.2022.04.021

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摘要

En 中文

Complex dynamic processes such as development involve the deployment of gene regulatory pathways that transform the spatial arrangement of cells. Disentangling these genetic programs is at the core of many biological problems. Stereo-seq is a promising spatial transcriptomics method, as demonstrated by three papers in this issue of Developmental Cell, each in a distinct biological context.

期刊

Developmental Cell

IF:

8.7

论文数:

6.3K

被引数:

3.4W

机构

New York University

学者数:

4.4W

论文数: 3.9W

被引数: 5.8W

引用论文

Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas 整合基于微阵列的空间转录组学和单细胞rna-seq揭示胰腺导管腺癌的组织结构

NATURE BIOTECHNOLOGY

IF41.7

2020-01-13

587

PREAI

Moncada, Reuben; Barkley, Dalia; Wagner, Florian; Chiodin, Marta; Devlin, Joseph C.; Baron, Maayan; Hajdu, Cristina H.; Simeone, Diane M.; Yanai, Itai

Phase transitions induced by severe plastic deformation: steady-state and equifinality

International Journal of Materials Research

IF0

2015-07-09

PREAI

Boris B. Straumal; Askar R. Kilmametov; Yulia Ivanisenko; Andrei A. Mazilkin; Olga A. Kogtenkova; Lilia Kurmanaeva; Anna Korneva; Pawel Zięba; Brigitte Baretzky

Making Synapses: A Balancing Act 制作突触: 一种平衡行为

Science

IF0

2005-02-25

PREAI

Natasha K. Hussain; Morgan Sheng

Segmentation and compartition in the early avian hindbrain

Mechanisms of Development

IF0

2004-09-01

OAAI

Andrew Lumsden

High-resolution 3D spatiotemporal transcriptomic maps of developing Drosophila embryos and larvae

DEVELOPMENTAL CELL

IF8.7

2022-05-01

OAAI

Wang, Mingyue; Hu, Qinan; Lv, Tianhang; Wang, Yuhang; Lan, Qing; Xiang, Rong; Tu, Zhencheng; Wei, Yanrong; Han, Kai; Shi, Chang; Guo, Junfu; Liu, Chao; Yang, Tao; Du, Wensi; An, Yanru; Cheng, Mengnan; Xu, Jiangshan; Lu, Haorong; Li, Wangsheng; Zhang, Shaofang; Chen, Ao; Chen, Wei; Li, Yuxiang; Wang, Xiaoshan; Xu, Xun; Hu, Yuhui; Liu, Longqi

Spatiotemporal mapping of gene expression landscapes and developmental trajectories during zebrafish embryogenesis

DEVELOPMENTAL CELL

IF8.7

2022-05-01

OAAI

Liu, Chang; Li, Rui; Li, Young; Lin, Xiumei; Zhao, Kaichen; Liu, Qun; Wang, Shuowen; Yang, Xueqian; Shi, Xuyang; Ma, Yuting; Pei, Chenyu; Wang, Hui; Bao, Wendai; Hui, Junhou; Yang, Tao; Xu, Zhicheng; Lai, Tingting; Berberoglu, Michael Arman; Sahu, Sunil Kumar; Esteban, Miguel A.; Ma, Kailong; Fan, Guangyi; Li, Yuxiang; Liu, Shiping; Chen, Ao; Xu, Xun; Dong, Zhiqiang; Liu, Longqi

The single-cell stereo-seq reveals region-specific cell subtypes and transcriptome profiling in Arabidopsis leaves 单细胞立体序列揭示了拟南芥叶片中的区域特异性细胞亚型和转录组分析

DEVELOPMENTAL CELL

IF8.7

2022-05-01

110

OAAI

Xia, Keke; Sun, Hai-Xi; Li, Jie; Li, Jiming; Zhao, Yu; Chen, Lichuan; Qin, Chao; Chen, Ruiying; Chen, Zhiyong; Liu, Guangyu; Yin, Ruilian; Mu, Bangbang; Wang, Xiaojuan; Xu, Mengyuan; Li, Xinyue; Yuan, Peisi; Qiao, Yixin; Hao, Shijie; Wang, Jing; Xie, Qing; Xu, Jiangshan; Liu, Shiping; Li, Yuxiang; Chen, Ao; Liu, Longqi; Yin, Ye; Yang, Huanming; Wang, Jian; Gu, Ying; Xu, Xun

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