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Optimization of Statistical Methods Impact on Quantitative Proteomics Data

delete2015-09-08
delete63
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OA
AI
A
Anna Pursiheimo
A
Anni P. Vehmas
S
Saira Afzal
T
Tomi Suomi
T
Thaman Chand
L
Leena Strauss
M
Matti Poutanen
A
Anne Rokka
G
Garry L. Corthals *
L
Laura L. Elo
DOI:10.1021/acs.jproteome.5b00183delete
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摘要

摘要

En 中文
As tools for quantitative label-free mass spectrometry (MS) rapidly develop, a consensus about the best practices is not apparent. In the work described here we compared popular statistical methods for detecting differential protein expression from quantitative MS data using both controlled experiments with known quantitative differences for specific proteins used as standards as well as real experiments where differences in protein abundance are not known a priori. Our results suggest that data-driven reproducibility-optimization can consistently produce reliable differential expression rankings for label-free proteome tools and are straightforward in their application.
Keyword:
proteomics
label-free mass spectrometry
quantitative analysis
statistical methods
reproducibility
ROTS
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期刊

Journal of Proteome Research 封面图
Journal of Proteome Research
IF:
3.6
论文数:
9.4K
被引数:
2.3W

机构

U
University of Turku
学者数:
1.7W
论文数: 1.5W
被引数: 2.0W
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