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ROPU: A robust online positive-unlabeled learning algorithm
DOI:10.1016/j.knosys.2024.112808.png)
摘要
En 中文
Positive-unlabeled (PU) learning aims to train classifiers using positive and unlabeled samples. Most methods assume a selected completely at random labeling scenario, which may not reflect real-world PU learning conditions. Our investigation across multiple peptide spectrum match datasets reveals a nonuniform distribution of labeled positive samples, concentrated in specific subsets. To address this, we propose a missing in a subset arealabeling assumption and analyze resulting model biases. Furthermore, we introduce nonconvex loss functions and develop a robust online positive-unlabeled (ROPU)classification algorithm using gradient descent. Theoretically, ROPU achieves sublinear nonstationary regret bounds under mild conditions. Experimental results demonstrate the effectiveness of ROPU across various simulated and practical PU learning datasets. The source code is available at https://github.com/Isaac-QiXing/ROPU.
Keyword:
PU learning
Online classification
Robustness
Regret bound
期刊
K
IF:
7.6
论文数:
1.2W
被引数:
4.5W
机构
引用论文
Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations
NATURE METHODS
IF32.1
MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry-based proteomicsMSFragger: 基于质谱的蛋白质组学中的超快和全面的肽鉴定
NATURE METHODS
IF32.1

