arrow
返回

Segmentation metric misinterpretations in bioimage analysis

delete2023-07-27
delete17
delete
OA
AI
D
Dominik Hirling
E
Ervin Tasnádi
J
Juan Carlos Caicedo
M
Maria Caroprese
R
Rickard Sjögren
M
Marc Aubreville
K
Krisztián Koós
P
Péter Horváth *
DOI:10.1038/s41592-023-01942-8delete
delete原文链接
delete分享
delete收藏
查看原文
摘要

摘要

En 中文
This study shows the importance of proper metrics for comparing algorithms for bioimage segmentation and object detection by exploring the impact of metrics on the relative performance of algorithms in three image analysis competitions. Quantitative evaluation of image segmentation algorithms is crucial in the field of bioimage analysis. The most common assessment scores, however, are often misinterpreted and multiple definitions coexist with the same name. Here we present the ambiguities of evaluation metrics for segmentation algorithms and show how these misinterpretations can alter leaderboards of influential competitions. We also propose guidelines for how the currently existing problems could be tackled.
Keyword:
NUCLEUS SEGMENTATION
AI总结

AI总结

对已上传原文的论文进行重点信息的提取,主要内容包括:简要概述、研究摘要、背景介绍、关键亮点、图文解析、展望与总结。

期刊

Nature Methods 封面图
Nature Methods
IF:
32.1
论文数:
7.2K
被引数:
12.7W

机构

H
Harvard University
学者数:
26.5W
论文数: 22.0W
被引数: 28.7W
H
Hungarian Academy of Sciences
学者数:
7.9K
论文数: 5.6K
被引数: 7.5K
H
hun-ren biological research center
学者数:
950
论文数: 674
被引数: 0
B
Broad Institute
学者数:
5.7K
论文数: 3.3K
被引数: 4.0W
S
szeged university
学者数:
9.6K
论文数: 6.7K
被引数: 3
学者 查看更多机构
引用论文

引用论文

nucleAIzer: A Parameter-free Deep Learning Framework for Nucleus Segmentation Using Image Style Transfer
err2020-05-01
err147
errOAAI
errHollandi, Reka; Szkalisity, Abel; Toth, Timea; Tasnadi, Ervin; Molnar, Csaba; Mathe, Botond; Grexa, Istvan; Molnar, Jozsef; Balind, Arpad; Gorbe, Mate; Kovacs, Maria; Migh, Ede; Goodman, Allen; Balassa, Tamas; Koos, Krisztian; Wang, Wenyu; Caicedo, Juan Carlos; Bara, Norbert; Kovacs, Ferenc; Paavolainen, Lassi; Danka, Tivadar; Kriston, Andras; Carpenter, Anne Elizabeth; Smith, Kevin; Horvath, Peter
err分享
err收藏
Manual and Electrical Needle Stimulation in Acupuncture Research: Pitfalls and Challenges of Heterogeneity
err2015-03-01
err0
errOAAI
errHelene M. Langevin; Rosa Schnyer; Hugh MacPherson; Robert Davis; Richard E. Harris; Vitaly Napadow; Peter M. Wayne; Ryan J. Milley; Lixing Lao; Elisabet Stener-Victorin; Jiang-Ti Kong; Richard Hammerschlag
err分享
err收藏
Contour proposal networks for biomedical instance segmentation
err2022-04-01
err28
errOAAI
errUpschulte, Eric; Harmeling, Stefan; Amunts, Katrin; Dickscheid, Timo
err分享
err收藏
LIVECell-A large-scale dataset for label-free live cell segmentationLIVECell-用于无标记活细胞分割的大规模数据集
err2021-08-30
err112
errOAAI
errEdlund, Christoffer; Jackson, Timothy R.; Khalid, Nabeel; Bevan, Nicola; Dale, Timothy; Dengel, Andreas; Ahmed, Sheraz; Trygg, Johan; Sjoegren, Rickard
err分享
err收藏
err分享
err收藏
The PASCAL Visual Object Classes Challenge: A RetrospectivePASCAL视觉对象课程挑战: 回顾性
err2014-06-25
err5.0K
PREAI
errEveringham, Mark; Eslami, S. M. Ali; Van Gool, Luc; Williams, Christopher K. I.; Winn, John; Zisserman, Andrew
err分享
err收藏
SpheroidPicker for automated 3D cell culture manipulation using deep learning
err2021-07-20
err21
errOAAI
errGrexa, Istvan; Diosdi, Akos; Kriston, Andras; Moshkov, Nikita; Harmati, Maria; Buzas, Krisztina; Pietiainen, Vilja; Koos, Krisztian; Horvath, Peter
err分享
err收藏
err
IF0
err
err0
PREAI
err
err分享
err收藏
Mitosis domain generalization in histopathology images - The MIDOG组织病理学图像中的有丝分裂域泛化-MIDOG
err2023-02-01
err42
errOAAI
errAubreville, Marc; Stathonikos, Nikolas; Bertram, Christof A.; Klopfleisch, Robert; ter Hoeve, Natalie; Ciompi, Francesco; Wilm, Frauke; Marzahl, Christian; Donovan, Taryn A.; Maier, Andreas; Breen, Jack; Ravikumar, Nishant; Chung, Youjin; Park, Jinah; Nateghi, Ramin; Pourakpour, Fattaneh; Fick, Rutger H. J.; Ben Hadj, Saima; Jahanifar, Mostafa; Shephard, Adam; Dexl, Jakob; Wittenberg, Thomas; Kondo, Satoshi; Lafarge, Maxime W.; Koelzer, Viktor H.; Liang, Jingtang; Wang, Yubo; Long, Xi; Liu, Jingxin; Razavi, Salar; Khademi, April; Yang, Sen; Wang, Xiyue; Erber, Ramona; Klang, Andrea; Lipnik, Karoline; Bolfa, Pompei; Dark, Michael J.; Wasinger, Gabriel; Veta, Mitko; Breininger, Katharina
err分享
err收藏
学者 查看更多内容