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Bridge over troubled transcripts

delete2022-03-28
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PRE
AI
G
Guillermo E. Parada
M
Martin Hemberg *
DOI:10.1038/s43588-022-00219-ydelete
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Abstract

Abstract

En 中文
Scallop2, a tool that enables accurate reference-guided transcriptome assembly, capitalizes on recent developments in short-read sequencing protocols for single-cell RNA sequencing by leveraging multi-end and paired-end information.

Journal

Nature Computational Science cover
Nature Computational Science
IF:
18.3
Papers:
3.1K
Citations:
4.0K

Organization

H
Harvard University
Scholars:
26.5W
Papers: 22.0W
Citations: 28.7W
U
university of toronto
Scholars:
14.8W
Papers: 12.0W
Citations: 165
Cited Papers

Cited Papers

Single cell transcriptomics comes of age
err2020-08-27
err210
errOAAI
errAldridge, Sarah; Teichmann, Sarah A.
errShare
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Accurate assembly of multi-end RNA-seq data with Scallop2
err2022-03-28
err8
errOAAI
errZhang, Qimin; Shi, Qian; Shao, Mingfu
errShare
errSave
errShare
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Obstacles to detecting isoforms using full-length scRNA-seq data
err2020-03-23
err32
errOAAI
errWestoby, Jennifer; Artemov, Pavel; Hemberg, Martin; Ferguson-Smith, Anne
errShare
errSave
High throughput error corrected Nanopore single cell transcriptome sequencing
err2020-08-12
err126
errOAAI
errLebrigand, Kevin; Magnone, Virginie; Barbry, Pascal; Waldmann, Rainer
errShare
errSave
errShare
errSave
Single-cell RNA counting at allele and isoform resolution using Smart-seq3
err2020-05-04
err402
errOAAI
errHagemann-Jensen, Michael; Ziegenhain, Christoph; Chen, Ping; Ramskold, Daniel; Hendriks, Gert-Jan; Larsson, Anton J. M.; Faridani, Omid R.; Sandberg, Rickard
errShare
errSave
Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads
err2010-11-24
err177
errOAAI
errMartin, Jeffrey; Bruno, Vincent M.; Fang, Zhide; Meng, Xiandong; Blow, Matthew; Zhang, Tao; Sherlock, Gavin; Snyder, Michael; Wang, Zhong
errShare
errSave
A survey of best practices for RNA-seq data analysis
err2016-01-26
err2.0K
errOAAI
errConesa, Ana; Madrigal, Pedro; Tarazona, Sonia; Gomez-Cabrero, David; Cervera, Alejandra; McPherson, Andrew; Szczesniak, Michal Wojciech; Gaffney, Daniel J.; Elo, Laura L.; Zhang, Xuegong; Mortazavi, Ali
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