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M

Martin Hemberg

Brigham and Women's Hospital and Harvard Medical School

51H-index
218Paper Count
1.8WCitation Count
Published Papers 81
Publication Date
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A genomic catalog of the mouse gut virome reveals features associated with ageing
errNature Communications
IF15.7
err2026-07-21
err0
errOAAI
errHan-June Kim; Nayeon Kim; Jun Hyung Cha; Wonjong Kim; Junyeong Ma; Jungyeon Kim; Yerin Kim; Sunmo Yang; Sanguine Byun; Eunjung Lee; Martin Hemberg; Insuk Lee
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The CARM1 epigenetic enzyme inhibits cross-presenting dendritic cell function in cancer immunity
errScience
IF45.8
err2026-07-09
err0
PREAI
errXixi Zhang; Sherin Xirenayi; Ye Zhao; Wen Wang; Yuyang Han; Miguel Sobral; Shawn Kang; Chi Zhang; Graham L. Barlow; Jason Pyrdol; Jae-Won Cho; Kun Huang; Xiaohan Ning; Martin Hemberg; Guo-Cheng Yuan; Eliezer M. Van Allen; David J. Mooney; Kai W. Wucherpfennig
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errSave
scCausalVI disentangles single-cell perturbation responses with causality-aware generative model
errCell Systems
IF7.7
err2025-11-05
err0
PREAI
errShaokun An; Jae-Won Cho; Kai Cao; Jiankang Xiong; Martin Hemberg; Lin Wan
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errSave
Insights, opportunities, and challenges provided by large cell atlases
errGenome Biology
IF9.4
err2025-10-22
err0
errOAAI
errMartin Hemberg; Federico Marini; Shila Ghazanfar; Ahmad Al Ajami; Najla Abassi; Benedict Anchang; Bérénice A. Benayoun; Yue Cao; Ken Chen; Yesid Cuesta-Astroz; Zachary DeBruine; Calliope A. Dendrou; Iwijn De Vlaminck; Katharina Imkeller; Ilya Korsunsky; Alex R. Lederer; Jessica Jingyi Li; Pieter Meysman; Clint L. Miller; Kerry A. Mullan; Uwe Ohler; Pratibha Panwar; Nikolaos Patikas; Jonas Schuck; Jacqueline H. Y. Siu; Timothy J. Triche; Alex Tsankov; Sander W. van der Laan; Masanao Yajima; Jean Yang; Fabio Zanini; Ivana Jelic
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errSave
Single-cell splicing QTL analysis in pancreatic islets
errFrontiers in Bioinformatics
IF3.9
err2025-09-27
err0
errOAAI
errJae-Won Cho; Jingyi Cao; Martin Hemberg
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errSave
Leveraging sequences missing from the human genome to diagnose cancer
errCommunications Medicine
IF6.3
err2025-08-21
err0
errOAAI
errIlias Georgakopoulos-Soares; Ofer Yizhar-Barnea; Ioannis Mouratidis; Candace S. Y. Chan; Michail Patsakis; Akshatha Nayak; Rachael Bradley; Mayank Mahajan; Jasmine Sims; Dianne Laboy Cintron; Ryder Easterlin; Julia S. Kim; Emmalyn Chen; Geovanni Pineda; Guillermo E. Parada; John S. Witte; Christopher A. Maher; Felix Feng; Ioannis Vathiotis; Nikolaos Syrigos; Emmanouil Panagiotou; Andriani Charpidou; Konstantinos Syrigos; Jocelyn Chapman; Mark Kvale; Martin Hemberg; Nadav Ahituv
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errSave
Detecting known neoepitopes, gene fusions, transposable elements, and circular RNAs in cell-free RNA
errBIOINFORMATICS
IF5.4
err2025-05-02
err0
errOAAI
errMahajan, M; Hemberg, M
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errSave
Lake Malawi cichlid pangenome graph reveals extensive structural variation driven by transposable elements
errGENOME RESEARCH
IF5.5
err2025-04-10
err0
PREAI
errQuah, Fu Xiang; Almeida, Miguel Vasconcelos; Blumer, Moritz; Yuan, Chengwei Ulrika; Fischer, Bettina; See, Kirsten; Jackson, Ben; Zatha, Richard; Rusuwa, Bosco; Turner, George F.; Santos, M. Emilia; Svardal, Hannes; Hemberg, Martin; Durbin, Richard; Miska, Eric
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errSave
Integrated histopathology, spatial and single cell transcriptomics resolve cellular drivers of early and late alveolar damage in COVID-19
errNATURE COMMUNICATIONS
IF15.7
err2025-03-10
err0
errOAAI
errLee, Jimmy Tsz Hang; Barnett, Sam N.; Roberts, Kenny; Ashwin, Helen; Milross, Luke; Cho, Jae-Won; Huseynov, Alik; Woodhams, Benjamin; Aivazidis, Alexander; Li, Tong; Majo, Joaquim; Chaves, Patricia; Lee, Michael; Miranda, Antonio M. A.; Jablonska, Zuzanna; Arena, Vincenzo; Hanley, Brian; Osborn, Michael; Uhlmann, Virginie; Xu, Xiao-Ning; Mclean, Gary R.; Teichmann, Sarah A.; Randi, Anna M.; Filby, Andrew; Kaye, Paul M.; Fisher, Andrew J.; Hemberg, Martin; Noseda, Michela; Bayraktar, Omer Ali
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errSave
ApoE ε4-dependent Alteration of CXCR3 + CD127+ CD4+ T cells associates with elevated plasma neurofilament light chain in Alzheimer's disease
errJOURNAL OF ALZHEIMERS DISEASE
IF3.1
err2025-03-01
err0
PREAI
errHu, Dan; Chen, Mei; Li, Xuyang; Daley, Sarah; Morin, Peter; Han, Yuyang; Hemberg, Martin; Weiner, Howard L.; Xia, Weiming
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errSave
TL1A-activated T cells as upstream regulators of perianal fistulizing disease-associated changes in the rectum of Crohn's Disease patients
errJOURNAL OF CROHNS & COLITIS
IF8.7
err2025-01-22
err0
PREAI
errGudino, V; Cho, J. W.; Caballol, B.; Corraliza, A. M.; Veny, M.; Sanzo-Machuca, A.; Genaro, L.; Melon-Ardanaz, E.; Masamunt, M. C.; Esteller, M.; Fernandez-Clotet, A.; Ordas, I; Franco-Leal, R.; Ricart, E.; Panes, J.; Hemberg, M.; Salas, A.
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errSave
The topography of nullomer-emerging mutations and their relevance to human disease
errCOMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
IF4.1
err2025-01-01
err0
errOAAI
errCandace S.Y. Chan; Ioannis Mouratidis; Austin Montgomery; Georgios Christos Tsiatsianis; Nikol Chantzi; Martin Hemberg; Nadav Ahituv; Ilias Georgakopoulos-Soares
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errSave
MEA-NAP: A flexible network analysis pipeline for neuronal 2D and 3D organoid multielectrode recordings
errCELL REPORTS METHODS
IF4.5
err2024-11-01
err0
errOAAI
errSit, Timothy P. H.; Feord, Rachael C.; Dunn, Alexander W. E.; Chabros, Jeremi; Oluigbo, David; Smith, Hugo H.; Burn, Lance; Chang, Elise; Boschi, Alessio; Yuan, Yin; Gibbons, George M.; Khayat-Khoei, Mahsa; De Angelis, Francesco; Hemberg, Erik; Hemberg, Martin; Lancaster, Madeline A.; Lakatos, Andras; Eglen, Stephen J.; Paulsen, Ole; Mierau, Susanna B.
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errSave
Spatially resolved analysis of pancreatic cancer identifies therapy-associated remodeling of the tumor microenvironment
errNATURE GENETICS
IF31.8
err2024-09-03
err1
PREAI
errShiau, Carina; Cao, Jingyi; Gong, Dennis; Gregory, Mark T.; Caldwell, Nicholas J.; Yin, Xunqin; Cho, Jae-Won; Wang, Peter L.; Su, Jennifer; Wang, Steven; Reeves, Jason W.; Kim, Tae Kyung; Kim, Youngmi; Guo, Jimmy A.; Lester, Nicole A.; Bae, Jung Woo; Zhao, Ryan; Schurman, Nathan; Barth, Jamie L.; Ganci, Maria L.; Weissleder, Ralph; Jacks, Tyler; Qadan, Motaz; Hong, Theodore S.; Wo, Jennifer Y.; Roberts, Hannah; Beechem, Joseph M.; Fernandez-del Castillo, Carlos; Mino-Kenudson, Mari; Ting, David T.; Hemberg, Martin; Hwang, William L.
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errSave
Mining alternative splicing patterns in scRNA-seq data using scASfind
errGENOME BIOLOGY
IF9.4
err2024-07-29
err0
errOAAI
errSong, Yuyao; Parada, Guillermo; Lee, Jimmy Tsz Hang; Hemberg, Martin
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errSave
Demuxafy: improvement in droplet assignment by integrating multiple single-cell demultiplexing and doublet detection methods
errGENOME BIOLOGY
IF9.4
err2024-04-15
err4
errOAAI
errNeavin, Drew; Senabouth, Anne; Arora, Himanshi; Lee, Jimmy Tsz Hang; Ripoll-Cladellas, Aida; Franke, Lude; Prabhakar, Shyam; Ye, Chun Jimmie; McCarthy, Davis J.; Mele, Marta; Hemberg, Martin; Powell, Joseph E.
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errSave
Single-cell and spatial transcriptomics: Bridging current technologies with long-read sequencing
errMOLECULAR ASPECTS OF MEDICINE
IF10.3
err2024-04-01
err2
PREAI
errYuan, Chengwei Ulrika; Quah, Fu Xiang; Hemberg, Martin
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errSave
Understanding spatial organization of cellular plasticity in pancreatic ductal adenocarcinoma
errCANCER RESEARCH
IF16.6
err2024-03-22
err0
PREAI
errZamora, Izabella; Parikh, Milan; Patel, Bidish K.; Bi, Lynn; Haviv, Doron; Cao, Jingyi; Shiau, Carina; Hemberg, Martin; Hwang, William L.; Hacohen, Nir; Ting, David T.; Mehta, Arnav
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errSave
Therapy-associated remodeling of pancreatic cancer revealed by single-cell spatial transcriptomics and optimal transport analysis
errCANCER RESEARCH
IF16.6
err2024-03-22
err0
PREAI
errCao, Jingyi; Shiau, Carina; Gong, Dennis; Gregory, Mark T.; Yin, Xunqin; Cho, Jae-Won; Wang, Peter L.; Su, Jennifer; Reeves, Jason W.; Guo, Jimmy A.; Lester, Nicole A.; Bae, Jung Woo; Zhao, Ryan; Hemberg, Martin; Hwang, William L.
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errSave
Deep spatial immunophenotyping of lymphoid aggregates in pancreatic cancer using multi-omic integration of ultra high-plex proteomics and transcriptomics
errCANCER RESEARCH
IF16.6
err2024-03-22
err0
PREAI
errGong, Dennis; Cao, Jingyi; Wang, Peter; Jhaveri, Niyati; Hou, Yue; Cheikh, Bassem B.; Ji, HaYeun; Gregory, Mark; Reeves, Jason; Patrick, Michael; Shiau, Carina; Su, Jennifer; Guo, Jimmy A.; Beechem, Joseph M.; Hemberg, Martin; Hwang, William L.; Park, Ryan
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Research Directions

No research directions
Co-authors
Cooperation Journals
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J
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