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Cellular deconvolution with continuous transitions

delete2023-07-13
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PRE
AI
Z
Zheyang Zhang
J
Jialiang Huang *
DOI:10.1038/s43588-023-00489-0delete
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Abstract

Abstract

En 中文
A recent work introduces a cellular deconvolution method, MeDuSA, of estimating cell-state abundance along a one-dimensional trajectory from bulk RNA-seq data with fine resolution and high accuracy, enabling the characterization of cell-state transition in various biological processes.

Journal

Nature Computational Science cover
Nature Computational Science
IF:
18.3
Papers:
3.1K
Citations:
4.0K

Organization

X
xiamen university
Scholars:
5.9W
Papers: 3.8W
Citations: 67
Cited Papers

Cited Papers

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Cell composition analysis of bulk genomics using single-cell data
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errFrishberg, Amit; Peshes-Yaloz, Naama; Cohn, Ofir; Rosentul, Diana; Steuerman, Yael; Valadarsky, Liran; Yankovitz, Gal; Mandelboim, Michal; Iraqi, Fuad A.; Amit, Ido; Mayo, Lior; Bacharach, Eran; Gat-Viks, Irit
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Determining cell type abundance and expression from bulk tissues with digital cytometry
err2019-05-06
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errNewman, Aaron M.; Steen, Chloe B.; Liu, Chih Long; Gentles, Andrew J.; Chaudhuri, Aadel A.; Scherer, Florian; Khodadoust, Michael S.; Esfahani, Mohammad S.; Luca, Bogdan A.; Steiner, David; Diehn, Maximilian; Alizadeh, Ash A.
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Revealing the vectors of cellular identity with single-cell genomics
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errWagner, Allon; Regev, Aviv; Yosef, Nir
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Benchmarking of cell type deconvolution pipelines for transcriptomics data
err2020-11-06
err249
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errCobos, Francisco Avila; Alquicira-Hernandez, Jose; Powell, Joseph E.; Mestdagh, Pieter; De Preter, Katleen
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