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Decoding bioprocesses with transcriptomics: Current status and future potential

delete2025-10-13
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PRE
AI
N
Nadja A. Henke *
B
Boas Pucker
A
Alexander Grünberger
DOI:10.1016/j.biotechadv.2025.108736delete
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Abstract

Abstract

En 中文
• Status quo of high throughput transcriptomics applied in bioprocess engineering. • Scopes of the reviewed studies: strain/cell line characterization, culture/media conditions, process operation modes and parameters as well as scale-up/down. • RNA-seq as gold-standard transcriptomic workflow. • Single-cell RNA-seq and Record-Seq to unravel population heterogeneities and cellular autobiographies.

Journal

Biotechnology Advances cover
Biotechnology Advances
IF:
12.5
Papers:
3.0K
Citations:
2.7W

Organization

U
university of bonn
Scholars:
3.3W
Papers: 2.6W
Citations: 29
K
karlsruhe institute of technology
Scholars:
2.0W
Papers: 1.5W
Citations: 23
Cited Papers

Cited Papers

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scTrends: A living review of commercial single-cell and spatial 'omic technologies
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errDe Jonghe, Joachim; Opzoomer, James W.; Vilas-Zornoza, Amaia; Nilges, Benedikt S.; Crane, Peter; Lee, Hower; Lara-Astiaso, David; Gross, Torsten; Morf, Jorg; Schneider, Kim; Cudini, Juliana; Ramos-Mucci, Lorenzo; Mooijman, Dylan; Tiklova, Katarina; Salas, Sergio Marco; Langseth, Christoffer Mattsson; Kashikar, Nachiket D.; The scTrends Consortium, The scTrends; Schapiro, Denis; Nilsson, Mats; Shalek, Alex K.; Cribbs, Adam P.; Taylor-King, Jake P.
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On-line targeted metabolomics for real-time monitoring of relevant compounds in fermentation processes
err2023-11-22
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errOAAI
errCortada-Garcia, Joan; Haggarty, Jennifer; Weidt, Stefan; Daly, Ronan; Arnold, S. Alison; Burgess, Karl
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CO2/HCO3 - perturbations of simulated large scale gradients in a scale-down device cause fast transcriptional responses in Corynebacterium glutamicum
err2014-08-21
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PREAI
errBuchholz, Jens; Graf, Michaela; Freund, Andreas; Busche, Tobias; Kalinowski, Joern; Blombach, Bastian; Takors, Ralf
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Assessment of robustness against dissolved oxygen/substrate oscillations for C-glutamicum DM1933 in two-compartment bioreactor
err2013-11-12
err39
PREAI
errKass, Friedrich; Hariskos, Ioanna; Michel, Andrea; Brandt, Hans-Jurgen; Spann, Robert; Junne, Stefan; Wiechert, Wolfgang; Neubauer, Peter; Oldiges, Marco
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