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DeepC: predicting 3D genome folding using megabase-scale transfer learning

delete2020-10-12
delete104
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OA
AI
R
Ron Schweßinger
M
Matthew Gosden
D
Damien J. Downes
R
Richard C. Brown
A
A. Marieke Oudelaar
J
Jelena Telenius
Y
Yee Whye Teh
G
Gerton Lunter *
J
Jim R. Hughes *
DOI:10.1038/s41592-020-0960-3delete
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Abstract

Abstract

En 中文
DeepC uses transfer learning-based deep neural networks for predicting genome folding from megabase-scale DNA sequence. Predicting the impact of noncoding genetic variation requires interpreting it in the context of three-dimensional genome architecture. We have developed deepC, a transfer-learning-based deep neural network that accurately predicts genome folding from megabase-scale DNA sequence. DeepC predicts domain boundaries at high resolution, learns the sequence determinants of genome folding and predicts the impact of both large-scale structural and single base-pair variations.
Keywords:
DOMAINS
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Journal

Nature Methods cover
Nature Methods
IF:
32.1
Papers:
7.2K
Citations:
12.7W

Organization

U
university of oxford
Scholars:
9.8W
Papers: 8.6W
Citations: 137
W
Wellcome Centre for Human Genetics
Scholars:
2.9K
Papers: 1.7K
Citations: 2