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Epiviz: interactive visual analytics for functional genomics data

delete2014-08-03
delete48
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OA
AI
F
Florin Chelaru
L
Llewellyn Smith
N
Naomi Goldstein
H
Héctor Corrada Bravo *
DOI:10.1038/NMETH.3038delete
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Abstract

Abstract

En 中文
Visualization is an integral aspect of genomics data analysis. Algorithmic-statistical analysis and interactive visualization are most effective when used iteratively. Epiviz (http://epiviz.cbcb.umd.edu/), a web-based genome browser, and the Epivizr Bioconductor package allow interactive, extensible and reproducible visualization within a state-of-the-art data-analysis platform.
Keywords:
BIOCONDUCTOR
EPIGENOME
BROWSER
AI Summary

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Key information extracted from the uploaded paper, including a brief overview, abstract, background, key highlights, visual analysis, and future outlook.

Journal

Nature Methods cover
Nature Methods
IF:
32.1
Papers:
7.2K
Citations:
12.7W

Organization

University System of Maryland cover
University System of Maryland
Scholars:
6.4W
Papers: 5.6W
Citations: 113
Cited Papers

Cited Papers

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errPaulson, Joseph N.; Stine, O. Colin; Bravo, Hector Corrada; Pop, Mihai
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Increased methylation variation in epigenetic domains across cancer types
err2011-06-26
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errHansen, Kasper Daniel; Timp, Winston; Bravo, Hector Corrada; Sabunciyan, Sarven; Langmead, Benjamin; McDonald, Oliver G.; Wen, Bo; Wu, Hao; Liu, Yun; Diep, Dinh; Briem, Eirikur; Zhang, Kun; Irizarry, Rafael A.; Feinberg, Andrew P.
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The UCSC Genome Browser Database: 2008 update
err2007-12-23
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errKarolchik, D.; Kuhn, R. M.; Baertsch, R.; Barber, G. P.; Clawson, H.; Diekhans, M.; Giardine, B.; Harte, R. A.; Hinrichs, A. S.; Hsu, F.; Kober, K. M.; Miller, W.; Pedersen, J. S.; Pohl, A.; Raney, B. J.; Rhead, B.; Rosenbloom, K. R.; Smith, K. E.; Stanke, M.; Thakkapallayil, A.; Trumbower, H.; Wang, T.; Zweig, A. S.; Haussler, D.; Kent, W. J.
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The Human Epigenome Browser at Washington University
err2011-11-29
err276
errOAAI
errZhou, Xin; Maricque, Brett; Xie, Mingchao; Li, Daofeng; Sundaram, Vasavi; Martin, Eric A.; Koebbe, Brian C.; Nielsen, Cydney; Hirst, Martin; Farnham, Peggy; Kuhn, Robert M.; Zhu, Jingchun; Smirnov, Ivan; Kent, W. James; Haussler, David; Madden, Pamela A. F.; Costello, Joseph F.; Wang, Ting
errShare
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Ensembl 2009
err2009-01-01
err735
errOAAI
errHubbard, T. J. P.; Aken, B. L.; Ayling, S.; Ballester, B.; Beal, K.; Bragin, E.; Brent, S.; Chen, Y.; Clapham, P.; Clarke, L.; Coates, G.; Fairley, S.; Fitzgerald, S.; Fernandez-Banet, J.; Gordon, L.; Graf, S.; Haider, S.; Hammond, M.; Holland, R.; Howe, K.; Jenkinson, A.; Johnson, N.; Kahari, A.; Keefe, D.; Keenan, S.; Kinsella, R.; Kokocinski, F.; Kulesha, E.; Lawson, D.; Longden, I.; Megy, K.; Meidl, P.; Overduin, B.; Parker, A.; Pritchard, B.; Rios, D.; Schuster, M.; Slater, G.; Smedley, D.; Spooner, W.; Spudich, G.; Trevanion, S.; Vilella, A.; Vogel, J.; White, S.; Wilder, S.; Zadissa, A.; Birney, E.; Cunningham, F.; Curwen, V.; Durbin, R.; Fernandez-Suarez, X. M.; Herrero, J.; Kasprzyk, A.; Proctor, G.; Smith, J.; Searle, S.; Flicek, P.
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Holmium Laser Enucleation of Prostate: Outcome and Complications of Self-taught Learning Curve
err2009-05-01
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errJosé Placer; Antoni Gelabert-Mas; Felip Vallmanya; Josep M. Manresa; Violeta Menéndez; Ramón Cortadellas; Octavio Arango
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Bioconductor: open software development for computational biology and bioinformatics
err2004-09-15
err1.1W
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errGentleman, RC; Carey, VJ; Bates, DM; Bolstad, B; Dettling, M; Dudoit, S; Ellis, B; Gautier, L; Ge, YC; Gentry, J; Hornik, K; Hothorn, T; Huber, W; Iacus, S; Irizarry, R; Leisch, F; Li, C; Maechler, M; Rossini, AJ; Sawitzki, G; Smith, C; Smyth, G; Tierney, L; Yang, JYH; Zhang, JH
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