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Hacktive matter: data-driven discovery through hackathon-based cross-disciplinary coding

delete2025-08-17
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PRE
AI
M
Megan T. Valentine *
R
Rae M. Robertson‐Anderson *
DOI:10.1039/D5SM00401Bdelete
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Abstract

Abstract

En 中文
The past decade has seen unprecedented growth in active matter and autonomous biomaterials research; yielding diverse classes of materials capable of flowing; contracting; bundling; de-mixing; and coalescing. These innovations promise revolutionary applications such as self-healing infrastructure; dynamic prosthetics; and self-sensing tissue implants. However; inconsistencies in metrics; definitions; and analysis algorithms across research groups; as well as the high-dimensionality of experimental data streams; has hindered the identification of performance intersections among such dynamic systems. Progress in this arena demands multi-disciplinary team approaches to discovery; with scaffolded training and cross-pollination of ideas; and requires new methods for learning and collaboration. To address this challenge; we have developed a hackathon platform to train future scientists and engineers in ‘big data’; interdisciplinary collaboration; and community coding; and to design and beta-test high-throughput (HTP) biomaterials analysis software and workflows. We enforce a flat hierarchy; pairing participants ranging from high school students to faculty with varied experiences and skills to collectively contribute to data acquisition and processing; ideation; coding; testing and dissemination. With clearly-defined goals and deliverables; participants achieve success through a series of tutorials; small group coding sessions; facilitated breakouts; and large group report-outs and discussions. These modules facilitate efficient iterative algorithm development and optimization; strengthen community and collaboration skills; and establish teams; benchmarks; and community standards for continued productive work. Our hackathons provide a powerful model for the soft matter community to educate and train students and collaborators in cutting edge data-driven analysis; which is critical for future innovation in complex materials research.
Keywords:
active matter
biomaterials
interdisciplinary collaboration
data-driven analysis
hackathon platform

Journal

Soft Matter cover
Soft Matter
IF:
2.8
Papers:
1.4K
Citations:
4.0W

Organization

No organization information available
Cited Papers

Cited Papers

Learning by doing? The relationship between effort, learning effect and product quality during hackathons of novice teams
err2024-04-08
err0
PREAI
errNuno Miguel Martins Pacheco; Mara Geisler; Medina Bajramovic; Gabrielle Fu; Anand Vazhapilli Sureshbabu; Markus Mörtl; Markus Zimmermann
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Kinesin and myosin motors compete to drive rich multiphase dynamics in programmable cytoskeletal composites
err2023-07-31
err3
errOAAI
errMcGorty, Ryan J.; Currie, Christopher J.; Michel, Jonathan; Sasanpour, Mehrzad; Gunter, Christopher; Lindsay, K. Alice; Rust, Michael J.; Katira, Parag; Das, Moumita; Ross, Jennifer L.; Robertson-Anderson, Rae M.
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Ten simple rules for building an enthusiastic iGEM team
err2022-03-04
err0
errOAAI
errLuis Garcia Morales; Niek H. A. Savelkoul; Zoë Robaey; Nico J. Claassens; Raymond H. J. Staals; Robert W. Smith
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Hack weeks as a model for data science education and collaboration
err2018-08-20
err40
errOAAI
errHuppenkothen, Daniela; Arendt, Anthony; Hogg, David W.; Ram, Karthik; VanderPlas, Jacob T.; Rokem, Ariel
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Ten simple rules to run a successful BioHackathon
err2020-05-07
err0
errOAAI
errLeyla Garcia; Erick Antezana; Alexander Garcia; Evan Bolton; Rafael Jimenez; Pjotr Prins; Juan M. Banda; Toshiaki Katayama
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Self-mixing in microtubule-kinesin active fluid from nonuniform to uniform distribution of activity
err2022-11-02
err3
errOAAI
errBate, Teagan E.; Varney, Megan E.; Taylor, Ezra H.; Dickie, Joshua H.; Chueh, Chih-Che; Norton, Michael M.; Wu, Kun-Ta
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Kinesin-Driven De-Mixing of Cytoskeleton Composites Drives Emergent Mechanical Properties
err2025-04-10
err0
errOAAI
errJanet Sheung; Christopher Gunter; Katarina Matic; Mehrzad Sasanpour; Jennifer L. Ross; Parag Katira; Megan T. Valentine; Rae M. Robertson-Anderson
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