arrow
Return

Proteomics Software in bio.tools: Coverage and Annotations

delete2021-03-15
delete2
delete
OA
AI
V
Veit Schwämmle *
J
Jennifer Harrow
H
Hans Ienasescu
DOI:10.1021/acs.jproteome.0c00978delete
deleteOriginal
deleteShare
deleteSave
View PDF
Abstract

Abstract

En 中文
The large diversity of experimental methods in proteomics as well as their increasing usage across biological and clinical research has led to the development of hundreds if not thousands of software tools to aid in the analysis and interpretation of the resulting data. Detailed information about these tools needs to be collected, categorized, and validated to guarantee their optimal utilization. A tools registry like bio.tools enables users and developers to identify new tools with more powerful algorithms or to find tools with similar functions for comparison. Here we present the content of the registry, which now comprises more than 1000 proteomics tool entries. Furthermore, we discuss future applications and engagement with other community efforts resulting in a high impact on the bioinformatics landscape.
Keywords:
tools
annotation
registry
ELIXIR
workflows
curation

Journal

Journal of Proteome Research cover
Journal of Proteome Research
IF:
3.6
Papers:
9.4K
Citations:
2.3W

Organization

T
technical university of denmark
Scholars:
2.6W
Papers: 2.8W
Citations: 37
U
University of Southern Denmark
Scholars:
2.1W
Papers: 2.0W
Citations: 2.9W
Cited Papers

Cited Papers

Experimental and early clinical evaluation of vascular anastomoses with argon laser fusion and the use of absorbable guy sutures: A preliminary report
err1990-10-01
err0
errOAAI
errRodney A. White; George E. Kopchok; Jerry Vlasak; York Hsiang; Roy M. Fujitani; Geoffrey H. White; Shi-Kaung Peng
errShare
errSave
One Thousand and One Software for Proteomics: Tales of the Toolmakers of Science
err2019-08-20
err17
errOAAI
errTsiamis, Vasileios; Ienasescu, Hans-Ioan; Gabrielaitis, Dovydas; Palmblad, Magnus; Schwammle, Veit; Ison, Jon
errShare
errSave
err
IF0
err
err0
PREAI
err
errShare
errSave
biotoolsSchema: a formalized schema for bioinformatics software description
err2021-01-27
err2
errOAAI
errIson, Jon; Ienasescu, Hans; Rydza, Emil; Chmura, Piotr; Rapacki, Kristoffer; Gaignard, Alban; Schwaemmle, Veit; van Helden, Jacques; Kalas, Matus; Menager, Herve
errShare
errSave
ProteomeXchange provides globally coordinated proteomics data submission and dissemination
err2014-03-10
err2.3K
errOAAI
errVizcaino, Juan A.; Deutsch, Eric W.; Wang, Rui; Csordas, Attila; Reisinger, Florian; Rios, Daniel; Dianes, Jose A.; Sun, Zhi; Farrah, Terry; Bandeira, Nuno; Binz, Pierre-Alain; Xenarios, Ioannis; Eisenacher, Martin; Mayer, Gerhard; Gatto, Laurent; Campos, Alex; Chalkley, Robert J.; Kraus, Hans-Joachim; Pablo Albar, Juan; Martinez-Bartolome, Salvador; Apweiler, Rolf; Omenn, Gilbert S.; Martens, Lennart; Jones, Andrew R.; Hermjakob, Henning
errShare
errSave
Robust automated computational approach for classifying frontotemporal neurodegeneration: Multimodal/multicenter neuroimaging
err2019-12-01
err0
errOAAI
errPatricio Andres Donnelly‐Kehoe; Guido Orlando Pascariello; Adolfo M. García; John R. Hodges; Bruce Miller; Howie Rosen; Facundo Manes; Ramon Landin‐Romero; Diana Matallana; Cecilia Serrano; Eduar Herrera; Pablo Reyes; Hernando Santamaria‐Garcia; Fiona Kumfor; Olivier Piguet; Agustin Ibanez; Lucas Sedeño
errShare
errSave
Bioconda: sustainable and comprehensive software distribution for the life sciences
err2018-07-02
err526
errOAAI
errGruening, Bjoern; Dale, Ryan; Sjoedin, Andreas; Chapman, Brad A.; Rowe, Jillian; Tomkins-Tinch, Christopher H.; Valieris, Renan; Koester, Johannes; Team, Bioconda
errShare
errSave
The bio.tools registry of software tools and data resources for the life sciences
err2019-08-12
err31
errOAAI
errIson, Jon; Ienasescu, Hans; Chmura, Piotr; Rydza, Emil; Menager, Herve; Kalas, Matus; Schwammle, Veit; Gruening, Bjoern; Beard, Niall; Lopez, Rodrigo; Duvaud, Severine; Stockinger, Heinz; Persson, Bengt; Varekova, Radka Svobodova; Racek, Tomas; Vondrasek, Jiri; Peterson, Hedi; Salumets, Ahto; Jonassen, Inge; Hooft, Rob; Nyronen, Tommi; Valencia, Alfonso; Capella, Salvador; Gelpi, Josep; Zambelli, Federico; Savakis, Babis; Leskosek, Brane; Rapacki, Kristoffer; Blanchet, Christophe; Jimenez, Rafael; Oliveira, Arlindo; Vriend, Gert; Collin, Olivier; van Helden, Jacques; Longreen, Peter; Brunak, Soren
errShare
errSave
researcher View more