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The AmberTools

delete2023-10-08
delete474
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OA
AI
D
David A. Case
H
Hasan Metin Aktulga
K
Kellon Belfon
D
David S. Cerutti
G
G. Andrés Cisneros
V
Vinícius Wilian D. Cruzeiro
N
Negin Forouzesh
T
Timothy J. Giese
A
Andreas W. Götz
H
Holger Gohlke
S
Saeed Izadi
K
Koushik Kasavajhala
M
Mehmet Cagri Kaymak
E
Edward J. King
T
Tom Kurtzman
T
Tai‐Sung Lee
P
Pengfei Li
刘剑 (Jian Liu)
T
Tyler Luchko
R
Ray Luo
M
Madushanka Manathunga
M
Matías Machado
H
Hai Nguyen
K
Kurt A. O’Hearn
A
Alexey V. Onufriev
F
Feng Pan
S
Sergio Pantano
R
Ruxi Qi
A
Ali Rahnamoun
A
Ali Risheh
S
Stephan Schott‐Verdugo
A
Akhil Shajan
J
Jason Swails
王君玫 cover
王君玫 (Junmei Wang)
H
Haixin Wei
X
Xiongwu Wu
Y
Yongxian Wu
S
Shi Zhang
S
Shiji Zhao
朱强 (Qiang Zhu)
T
Thomas E. Cheatham
D
Daniel R. Roe
A
Adrián E. Roitberg
C
Carlos Simmerling
D
Darrin M. York
M
Maria C. Nagan *
K
Kenneth M. Merz *
DOI:10.1021/acs.jcim.3c01153delete
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Abstract

Abstract

En 中文
AmberTools is a free and open-source collection of programs used to set up, run, and analyze molecular simulations. The newer features contained within AmberTools23 are briefly described in this Application note.
Keywords:
FREE-ENERGY CALCULATIONS
GENERALIZED BORN MODEL
MOLECULAR-DYNAMICS
FORCE-FIELD
ATOMIC CHARGES
NUCLEIC-ACIDS
SIMULATION
MECHANICS
EXTENSION
PROTEINS
AI Summary

AI Summary

Key information extracted from the uploaded paper, including a brief overview, abstract, background, key highlights, visual analysis, and future outlook.

Journal

Journal of Chemical Information and Modeling cover
Journal of Chemical Information and Modeling
IF:
5.3
Papers:
9.1K
Citations:
4.0W

Organization

L
Loyola University Chicago
Scholars:
8.0K
Papers: 6.0K
Citations: 5.8K
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California State University System
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University of Texas Dallas
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stony brook university
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1.3W
Papers: 1.0W
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rutgers university new brunswick
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Stanford University
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9.6W
Papers: 8.2W
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rutgers university system
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roche holding usa
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California State University Los Angeles
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University of California System cover
University of California System
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university of texas system
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peking university
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Heinrich Heine University Dusseldorf
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Papers: 1.4W
Citations: 126
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University of California San Diego
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Citations: 924
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city university of new york (cuny) system
Scholars:
1.6W
Papers: 1.5W
Citations: 26
M
michigan state university
Scholars:
3.6W
Papers: 3.2W
Citations: 44
U
university of california irvine
Scholars:
2.3W
Papers: 1.7W
Citations: 55
C
chinese academy of sciences
Scholars:
56.0W
Papers: 44.8W
Citations: 704
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