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M

Maria C. Nagan

stony brook university

11H-index
24Paper Count
2.0KCitation Count
Published Papers 11
Publication Date
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Deciphering hydration patterns across RNA conformations: Insights into water-mediated RNA recognition
errCurrent Research in Structural Biology
IF2.5
err2026-02-13
err0
errOAAI
errArghya P. Ghosh; Julia N. DuVal; Adrianna M. Cavoto; Maria C. Nagan
errShare
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Recent Developments in Amber Biomolecular Simulations
errJournal of Chemical Information and Modeling
IF5.3
err2025-07-29
err0
errOAAI
errDavid A. Case; David S. Cerutti; Vinícius Wilian D. Cruzeiro; Thomas A. Darden; Robert E. Duke; Mahdieh Ghazimirsaeed; George M. Giambaşu; Timothy J. Giese; Andreas W. Götz; Julie A. Harris; Koushik Kasavajhala; Tai-Sung Lee; Zhen Li; Charles Lin; Jian Liu; Yinglong Miao; Romelia Salomon-Ferrrer; Jana Shen; Ryan Snyder; Jason Swails; Ross C. Walker; Jinan Wang; Xiongwu Wu; Jinzhe Zeng; Thomas E. Cheatham III; Daniel R. Roe; Adrian Roitberg; Carlos Simmerling; Darrin M. York; Maria C. Nagan; Kenneth M. Merz Jr.
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errSave
Accurately Modeling RNA Stem-Loops in an Implicit Solvent Environment
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2024-07-13
err1
PREAI
errLinzer, Jason T.; Aminov, Ethan; Abdullah, Aalim S.; Kirkup, Colleen E.; Diaz Ventura, Rebeca I.; Bijoor, Vinay R.; Jung, Jiyun; Huang, Sophie; Tse, Chi Gee; Toucet, Emily Alvarez; Onghai, Hugo P.; Ghosh, Arghya P.; Grodzki, Alex C.; Haines, Emilee R.; Iyer, Aditya S.; Khalil, Mark K.; Leong, Alexander P.; Neuhaus, Michael A.; Park, Joseph; Shahid, Asir; Xie, Matthew; Ziembicki, Jan M.; Simmerling, Carlos; Nagan, Maria C.
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The AmberTools
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2023-10-08
err474
errOAAI
errCase, David A.; Aktulga, Hasan Metin; Belfon, Kellon; Cerutti, David S.; Cisneros, G. Andres; Cruzeiro, Vinicus Wilian D.; Forouzesh, Negin; Giese, Timothy J.; Gotz, Andreas W.; Gohlke, Holger; Izadi, Saeed; Kasavajhala, Koushik; Kaymak, Mehmet C.; King, Edward; Kurtzman, Tom; Lee, Tai-Sung; Li, Pengfei; Liu, Jian; Luchko, Tyler; Luo, Ray; Manathunga, Madushanka; Machado, Matias R.; Nguyen, Hai Minh; O'Hearn, Kurt A.; Onufriev, Alexey V.; Pan, Feng; Pantano, Sergio; Qi, Ruxi; Rahnamoun, Ali; Risheh, Ali; Schott-Verdugo, Stephan; Shajan, Akhil; Swails, Jason; Wang, Junmei; Wei, Haixin; Wu, Xiongwu; Wu, Yongxian; Zhang, Shi; Zhao, Shiji; Zhu, Qiang; Cheatham, I. I. I. Thomas E.; Roe, Daniel R.; Roitberg, Adrian; Simmerling, Carlos; York, Darrin M.; Nagan, Maria C.; Merz, Jr Kenneth M.
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The Impacts of the Molecular Education and Research Consortium in Undergraduate Computational Chemistry on the Careers of Women in Computational Chemistry
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2022-08-10
err1
PREAI
errAnderson, Kelly; Arradondo, Sarah; Ball, K. Aurelia; Bruce, Chrystal; Gomez, Maria A.; He, Kedan; Hendrickson, Heidi; Madison, Lindsey; McDonald, Ashley Ringer; Nagan, Maria C.; Scott, Caitlin E.; Soto, Patricia; Tomlinson, Aime'e; Varner, Mychel; Parish, Carol
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errSave
Women Make COMP: Mentoring the Next Generation of Women in Computational Chemistry
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2019-09-16
err3
errOAAI
errPalermo, Giulia; Armacost, Kira A.; Nagan, Maria C.
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errSave
Molecular dynamics simulations of human tRNA Lys,3UUU :: the role of modified bases in mRNA recognition
errNUCLEIC ACIDS RESEARCH
IF13.1
err2006-09-29
err42
errOAAI
errMcCrate, Nina E.; Varner, Mychel E.; Kim, Kenneth I.; Nagan, Maria C.
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errSave
Pre-transfer editing by class II prolyl-tRNA synthetase - Role of aminoacylation active site in selective release of noncognate amino acids
errJOURNAL OF BIOLOGICAL CHEMISTRY
IF3.9
err2006-09-01
err78
errOAAI
errHati, Sanchita; Ziervogel, Brigitte; SternJohn, Julius; Wong, Fai-Chu; Nagan, Maria C.; Rosen, Abbey E.; Siliciano, Paul G.; Chihade, Joseph W.; Musier-Forsyth, Karin
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errSave
Efficient aminoacylation of the tRNAAla acceptor stem:: Dependence on the 2:71 base pair
errRNA
IF5
err2002-05-01
err19
errOAAI
errBeuning, PJ; Nagan, MC; Cramer, CJ; Musier-Forsyth, K; Gelpí, JL; Bashford, D
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errSave
Importance of discriminator base stacking interactions:: molecular dynamics analysis of A73 microhelixAla variants
errNUCLEIC ACIDS RESEARCH
IF13.1
err2000-07-01
err33
errOAAI
errNagan, MC; Beuning, P; Musier-Forsyth, K; Cramer, CJ
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errSave
Wild-type RNA microhelixAla and 3:70 variants:: Molecular dynamics analysis of local helical structure and tightly bound water
errJOURNAL OF THE AMERICAN CHEMICAL SOCIETY
IF15.6
err1999-07-28
err41
PREAI
errNagan, MC; Kerimo, SS; Musier-Forsyth, K; Cramer, CJ
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errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
C
Christopher J. Cramer
H-index: 110 · Papers: 864
D
David A. Case
H-index: 107 · Papers: 518
K
Kenneth M. Merz
H-index: 83 · Papers: 690
王君玫 cover
王君玫 (Junmei Wang)
H-index: 76 · Papers: 751
T
Thomas E. Cheatham
H-index: 68 · Papers: 288
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