The Reactome BioMart

doi:10.1093/database/bar031

Return

The Reactome BioMart

2011-10-19

DOI：10.1093/database/bar031

Original

Save

View PDF

Abstract

En 中文

Reactome is an open source, expert-authored, manually curated and peer-reviewed database of reactions, pathways and biological processes. We provide an intuitive web-based user interface to pathway knowledge and a suite of data analysis tools. The Reactome BioMart provides biologists and bioinformaticians with a single web interface for performing simple or elaborate queries of the Reactome database, aggregating data from different sources and providing an opportunity to integrate experimental and computational results with information relating to biological pathways. Database URL: http://www.reactome.org

Keywords:

COMMUNITY STANDARD

BIOINFORMATICS

REPRESENTATION

KNOWLEDGEBASE

BIOCONDUCTOR

PATHWAYS

BIOLOGY

NETWORK

GENOMES

CANCER

AI Summary

Key information extracted from the uploaded paper, including a brief overview, abstract, background, key highlights, visual analysis, and future outlook.

Journal

Database-The Journal of Biological Databases and Curation

IF:

3.6

Papers:

1.8K

Citations:

6.1K

Organization

European Bioinformatics Institute

Scholars:

1.2K

Papers: 605

Citations: 1.4W

Ontario Institute for Cancer Research

Scholars:

1.3K

Papers: 692

Citations: 4.6K

university of toronto

Scholars:

14.8W

Papers: 12.0W

Citations: 165

View more organizations

Cited Papers

The BioPAX community standard for pathway data sharing

NATURE BIOTECHNOLOGY

IF41.7

2010-09-09

507

OAAI

Demir, Emek; Cary, Michael P.; Paley, Suzanne; Fukuda, Ken; Lemer, Christian; Vastrik, Imre; Wu, Guanming; D'Eustachio, Peter; Schaefer, Carl; Luciano, Joanne; Schacherer, Frank; Martinez-Flores, Irma; Hu, Zhenjun; Jimenez-Jacinto, Veronica; Joshi-Tope, Geeta; Kandasamy, Kumaran; Lopez-Fuentes, Alejandra C.; Mi, Huaiyu; Pichler, Elgar; Rodchenkov, Igor; Splendiani, Andrea; Tkachev, Sasha; Zucker, Jeremy; Gopinath, Gopal; Rajasimha, Harsha; Ramakrishnan, Ranjani; Shah, Imran; Syed, Mustafa; Anwar, Nadia; Babur, Oezguen; Blinov, Michael; Brauner, Erik; Corwin, Dan; Donaldson, Sylva; Gibbons, Frank; Goldberg, Robert; Hornbeck, Peter; Luna, Augustin; Murray-Rust, Peter; Neumann, Eric; Reubenacker, Oliver; Samwald, Matthias; van Iersel, Martijn; Wimalaratne, Sarala; Allen, Keith; Braun, Burk; Whirl-Carrillo, Michelle; Cheung, Kei-Hoi; Dahlquist, Kam; Finney, Andrew; Gillespie, Marc; Glass, Elizabeth; Gong, Li; Haw, Robin; Honig, Michael; Hubaut, Olivier; Kane, David; Krupa, Shiva; Kutmon, Martina; Leonard, Julie; Marks, Debbie; Merberg, David; Petri, Victoria; Pico, Alex; Ravenscroft, Dean; Ren, Liya; Shah, Nigam; Sunshine, Margot; Tang, Rebecca; Whaley, Ryan; Letovksy, Stan; Buetow, Kenneth H.; Rzhetsky, Andrey; Schachter, Vincent; Sobral, Bruno S.; Dogrusoz, Ugur; McWeeney, Shannon; Aladjem, Mirit; Birney, Ewan; Collado-Vides, Julio; Goto, Susumu; Hucka, Michael; Le Novere, Nicolas; Maltsev, Natalia; Pandey, Akhilesh; Thomas, Paul; Wingender, Edgar; Karp, Peter D.; Sander, Chris; Bader, Gary D.

Save

VectorBase: a data resource for invertebrate vector genomics

NUCLEIC ACIDS RESEARCH

IF13.1

2009-01-01

225

OAAI

Lawson, Daniel; Arensburger, Peter; Atkinson, Peter; Besansky, Nora J.; Bruggner, Robert V.; Butler, Ryan; Campbell, Kathryn S.; Christophides, George K.; Christley, Scott; Dialynas, Emmanuel; Hammond, Martin; Hill, Catherine A.; Konopinski, Nathan; Lobo, Neil F.; MacCallum, Robert M.; Madey, Greg; Megy, Karine; Meyer, Jason; Redmond, Seth; Severson, David W.; Stinson, Eric O.; Topalis, Pantelis; Birney, Ewan; Gelbart, William M.; Kafatos, Fotis C.; Louis, Christos; Collins, Frank H.

Save

Reactome knowledgebase of human biological pathways and processes

NUCLEIC ACIDS RESEARCH

IF13.1

2009-01-01

719

OAAI

Matthews, Lisa; Gopinath, Gopal; Gillespie, Marc; Caudy, Michael; Croft, David; de Bono, Bernard; Garapati, Phani; Hemish, Jill; Hermjakob, Henning; Jassal, Bijay; Kanapin, Alex; Lewis, Suzanna; Mahajan, Shahana; May, Bruce; Schmidt, Esther; Vastrik, Imre; Wu, Guanming; Birney, Ewan; Stein, Lincoln; D'Eustachio, Peter

Save

Ensembl 2011

NUCLEIC ACIDS RESEARCH

IF13.1

2010-11-02

620

OAAI

Flicek, Paul; Amode, M. Ridwan; Barrell, Daniel; Beal, Kathryn; Brent, Simon; Chen, Yuan; Clapham, Peter; Coates, Guy; Fairley, Susan; Fitzgerald, Stephen; Gordon, Leo; Hendrix, Maurice; Hourlier, Thibaut; Johnson, Nathan; Kaehaeri, Andreas; Keefe, Damian; Keenan, Stephen; Kinsella, Rhoda; Kokocinski, Felix; Kulesha, Eugene; Larsson, Pontus; Longden, Ian; McLaren, William; Overduin, Bert; Pritchard, Bethan; Riat, Harpreet Singh; Rios, Daniel; Ritchie, Graham R. S.; Ruffier, Magali; Schuster, Michael; Sobral, Daniel; Spudich, Giulietta; Tang, Y. Amy; Trevanion, Stephen; Vandrovcova, Jana; Vilella, Albert J.; White, Simon; Wilder, Steven P.; Zadissa, Amonida; Zamora, Jorge; Aken, Bronwen L.; Birney, Ewan; Cunningham, Fiona; Dunham, Ian; Durbin, Richard; Fernandez-Suarez, Xose M.; Herrero, Javier; Hubbard, Tim J. P.; Parker, Anne; Proctor, Glenn; Vogel, Jan; Searle, Stephen M. J.

Save

KEGG for linking genomes to life and the environment

NUCLEIC ACIDS RESEARCH

IF13.1

2007-12-23

5.7K

OAAI

Kanehisa, Minoru; Araki, Michihiro; Goto, Susumu; Hattori, Masahiro; Hirakawa, Mika; Itoh, Masumi; Katayama, Toshiaki; Kawashima, Shuichi; Okuda, Shujiro; Tokimatsu, Toshiaki; Yamanishi, Yoshihiro

Save

A new bioinformatics analysis tools framework at EMBL-EBI

NUCLEIC ACIDS RESEARCH

IF13.1

2010-05-03

1.7K

OAAI

Goujon, Mickael; McWilliam, Hamish; Li, Weizhong; Valentin, Franck; Squizzato, Silvano; Paern, Juri; Lopez, Rodrigo

Save

The IKMC web portal: a central point of entry to data and resources from the International Knockout Mouse Consortium

NUCLEIC ACIDS RESEARCH

IF13.1

2010-10-06

OAAI

Ringwald, Martin; Iyer, Vivek; Mason, Jeremy C.; Stone, Kevin R.; Tadepally, Hamsa D.; Kadin, James A.; Bult, Carol J.; Eppig, Janan T.; Oakley, Darren J.; Briois, Sebastien; Stupka, Elia; Maselli, Vincenza; Smedley, Damian; Liu, Songyan; Hansen, Jens; Baldock, Richard; Hicks, Geoff G.; Skarnes, William C.

Save

BioMart - biological queries made easy

BMC GENOMICS

IF3.7

2009-01-14

735

OAAI

Smedley, Damian; Haider, Syed; Ballester, Benoit; Holland, Richard; London, Darin; Thorisson, Gudmundur; Kasprzyk, Arek

Save

The effects of co-infection with human parvovirus B19 and Plasmodium falciparum on type and degree of anaemia in Ghanaian children

Asian Pacific Journal of Tropical Biomedicine

IF0