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European Bioinformatics Institute

Scholars1.1K
Papers604
Citations1.4W
Related Papers (589)
Publication Date
Investigating enzyme function by geometric matching of catalytic motifs
err2026-08-11
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errOAAI
errRaymund E. Hackett; Ioannis G. Riziotis; Martin Larralde; António J. M. Ribeiro; Georg Zeller; Janet M. Thornton
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Artificial intelligence in drug discovery — what it is, where we stand and the path forward
err2026-08-07
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PREAI
errAndreas Bender; Morgan C. Thomas; Jack W. Scannell; David A. Shaywitz; Gian Marco Ghiandoni; Joe G. Greener; Lavinia-Lorena Pruteanu; Rachel DeVay Jacobson; Koichi Handa; Mariko Hirano; Srijit Seal; Manas Mahale; Marco F. Schmidt; Tim Ahfeldt; Francesca Grisoni; Isidro Cortes-Ciriano
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A tumour-derived organoid biobank maps cancer gene dependencies
errNature
IF48.5
err2026-08-05
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errOAAI
errC. Herranz-Ors; S. G. Bhosle; A. E. Beck; J. G. R. Gilbert; G. Picco; J. Espejo Valle-Inclan; F. Muyas; S. Valentini; A. E. Andres; R. Ansari; S. Barthorpe; G. Battarbee; C. M. Beaver; S. Brocklesby; J. Cantwell; C. A. Collins; J. Davis; H. G. Dimitrova; J. Doran; E. Efendi; K. Evans; M. Fekry; T. A. Fowler; M. Garcia-Casado; J. A. T. Griffiths; C. Hall; R. Hamer; C. Hardy; Z. Hewitson; E. Hitch; L. Holland; D. A. Jackson; N. Joshi; A. Kavasakali; L. Letchford; H. B. Lightfoot; H. Lingala; I. Mali; K. May; T. Mironenko; J. Morris; C. Pacini; S. Price; G. Robert-Tissot; H. A. Rogers; J. V. Smith; K. Smith; E. Souster; W. J. Spence; F. Thomas; S. F. Vieira; S. Walker; G. Alfonsin; H. Bermingham; H. Coles; D. P. Ennis; A. Freeman; G. Giannone; N. Grehan; E. A. Griffiths; J. Hall; S. L. Lee; E. Y. L. Leung; C. Loreno; C. Millington; A. Mirnezami; B. Nutzinger; K. Orzechowska; C. M. A. Pinna; A. M. Redmond; K. Roberts; S. Roy; D. A. Sanders; P. Taniere; M. Vias; K. Wanigasooriya; M. R. Stratton; L. M. Staudt; U. McDermott; J. D. Brenton; I. A. McNeish; A. Biankin; O. J. Sansom; I. Cortes-Ciriano; T. J. Underwood; R. C. Fitzgerald; A. D. Beggs; H. E. Francies; M. J. Garnett
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AI proteomics: from protein identification to virtual cells
err2026-07-28
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PREAI
errYingying Sun; Jun A; Zhiwei Liu; Rui Sun; Liujia Qian; Samuel H. Payne; Wout Bittremieux; Markus Ralser; Chen Li; Yi Chen; Zhen Dong; Yasset Perez-Riverol; Asif Khan; Chris Sander; Ruedi Aebersold; Juan Antonio Vizcaíno; Jonathan R. Krieger; Jianhua Yao; Wen Han; Linfeng Zhang; Yunping Zhu; Yue Xuan; Benjamin Boyang Sun; Liang Qiao; Henning Hermjakob; Haixu Tang; Huanhuan Gao; Yamin Deng; Qing Zhong; Cheng Chang; Nuno Bandeira; Ming Li; Weinan E; Siqi Sun; Yuedong Yang; Gilbert S. Omenn; Yue Zhang; Ping Xu; Yan Fu; Xiaowen Liu; Christopher M. Overall; Yu Wang; Eric W. Deutsch; Luonan Chen; Jürgen Cox; Vadim Demichev; Fuchu He; Jiaxing Huang; Huilin Jin; Chao Liu; Nan Li; Zhongzhi Luan; Jiangning Song; Kaicheng Yu; Wanggen Wan; Tai Wang; Kang Zhang; Le Zhang; Peter A. Bell; Matthias Mann; Bing Zhang; Tiannan Guo
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The need for standardization and improved open (meta)data practices in metaproteomics
err2026-07-23
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errTim Van Den Bossche; Maximilian Wolf; Jean Armengaud; Magnus Ø. Arntzen; Dirk Benndorf; Daniel Figeys; Lucia Grenga; Robert L. Hettich; Nithu Sara John; Pratik Jagtap; Nico Jehmlich; Manuel Kleiner; Benoit J. Kunath; Leyuan Li; Mary Lipton; Bart Mesuere; Benjamin A. Neely; Zhibin Ning; Ane Laura Pedersen; Yasset Perez-Riverol; Jeena Rajan; Kay Schallert; Jana Seifert; Sergio Uzzau; Pieter Verschaffelt; Paul Wilmes; Juan Antonio Vizcaíno; Lennart Martens; Robert Heyer
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Genetic background sets the trajectory of experimental cancer evolution
errNature
IF48.5
err2026-07-22
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errOAAI
errSarah J. Aitken; Frances Connor; Christine Feig; Tim F. Rayner; Margus Lukk; Juliet Luft; Stuart Aitken; Claudia Arnedo-Pac; James F. Hayes; Michael D. Nicholson; Ailith Ewing; Vasavi Sundaram; Jan C. Verburg; John Connelly; Craig J. Anderson; Mikaela Behm; Susan Campbell; Maëlle Daunesse; Vera B. Kaiser; Elissavet Kentepozidou; Oriol Pich; Aisling M. Redmond; Javier Santoyo-Lopez; Inés Sentís; Lana Talmane; Paul Flicek; Núria López-Bigas; Colin A. Semple; Martin S. Taylor; Duncan T. Odom
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Plasticity under pressure: biology and detection of lineage switch in acute leukemia
errLeukemia
IF13.4
err2026-06-26
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PREAI
errAlexandra E. Kovach; Yang-Yang Ding; Adam J. Lamble; Kathrin Bernt; Simon Bomken; Lisa E. Brodersen; Barbara Buldini; Dana Delgado Colon; Tim H. H. Coorens; Rula Green Gladden; Zhaohui Gu; Shimin Hu; Elad Jacoby; Derek Janssens; Jason H. Kurzer; Ester Mejstrikova; Sunil S. Raikar; Susan R. Rheingold; Sara K. Silbert; Kai Tan; Constance M. Yuan; Hao-Wei Wang; Sara Ghorashian; Nirali N. Shah; Kara L. Davis
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Complete genomes reveal a refined map of Mycobacterium tuberculosis genetic diversity across evolutionary scales
err2026-06-06
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errAna María García-Marín; Manuela Torres-Puente; Llúcia Martinez-Priego; Griselda De Marco; Miguel Moreno-Molina; Martin Hunt; Zamin Iqbal; Ana Gil-Brusola; Mariana G. López; Fernando González-Candelas; Javier Alonso-del-Real; Iñaki Comas
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Genome instability triggers intercellular DNA transfer between human cells
errCell
IF42.5
err2026-05-19
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errOAAI
errElizabeth G. Maurais; Alice Mazzagatti; Yu-Fen Lin; Maria Narozna; Qing Hu; Rashmi Dahiya; Derek Santiago-Ferrer; Conor P. Herlihy; Mary Krebs; Nikoleta Pateraki; Evlampia Parcharidou; Stamatis Papathanasiou; Brian J. Beliveau; Gary J. Gorbsky; Isidro Cortés-Ciriano; Peter Ly
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An international framework for clinical translation of molecular classifiers in osteosarcoma
err2026-05-05
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errOAAI
errAmanda E. Marinoff; Michaela Nathrath; David S. Shulman; Sarah B. Whittle; Jovana Pavisic; Dimitrios Spentzos; Catherine M. Albert; Joshua O. Nash; Adam Shlien; Isidro Cortés-Ciriano; Antonin Marchais; Eunice López-Fuentes; Christina Curtis; E. Alejandro Sweet-Cordero; Richard Gorlick; Natalie DelRocco; Rashmi Chugh; William D. Tap; Adrienne M. Flanagan; Nathalie Gaspar; Brian D. Crompton; Damon R. Reed; Katherine A. Janeway; Patrick J. Grohar; J. Andrew Livingston; Ryan D. Roberts
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An expanded reference catalog of translated open reading frames for biomedical research
err2026-04-13
err1
PREAI
errChothani, Sonia; Ruiz-Orera, Jorge; Tierney, Jack A. S.; Swirski, Michal, I; Tjeldnes, Hakon; Kok, Leron W.; Clauwaert, Jim; Deutsch, Eric W.; Alba, M. Mar; Aspden, Julie L.; Baranov, Pavel, V; Bazzini, Ariel Alejandro; Bruford, Elspeth A.; Brunet, Marie A.; Cardon, Tristan; Carvunis, Anne-Ruxandra; Casola, Claudio; Choudhary, Jyoti Sharma; Dean, Kellie; Faridi, Pouya; Fierro-Monti, Ivo; Fournier, Isabelle; Frankish, Adam; Gerstein, Mark; Hubner, Norbert; Jiang, Yunzhe; Kellis, Manolis; Martinez, Thomas F.; Menschaert, Gerben; Ni, Pengyu; Orchard, Sandra; Roucou, Xavier; Rozowsky, Joel; Salzet, Michel; Siragusa, Mauro; Slavoff, Sarah; Ternette, Nicola; Vizcaino, Juan Antonio; Wacholder, Aaron; Wu, Wei; Xie, Zhi; Yang, Yucheng T.; Moritz, Robert L.; Valen, Eivind; Mudge, Jonathan; van Heesch, Sebastiaan; Prensner, John R.; Rackham, Owen J. L.
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First full-genome alignment representative for the genus Pestivirus
errRNA
IF5
err2026-03-01
err1
PREAI
errTriebel, Sandra; Eulenfeld, Tom; Ontiveros-Palacios, Nancy; Sweeney, Blake; Tautz, Norbert; Marz, Manja
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Building capacity in imaging data management
err2026-03-01
err1
PREAI
errVelasquez, Silvia Melina; Fletcher, Georgina; Burel, Jean-Marie; Parsons, Maddy; Swedlow, Jason; Hartley, Matthew; Bagia, Seema; Beckett, Alison; Crichton, James H.; Cross, Stephen John; Foulkes, Daniel M.; Grimshaw, James; Held, Marie; Ho, Kenneth; Jones, Martin; Lee, Martin; Marcello, Marco; Marcotti, Stefania; Markus, Robert; Mcconnell, Gail; Thomas, Steven G.; West, Steven J.; Wheeler, Ann; Yoldas, Aybuke
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Rate variation and recurrent sequence errors in pandemic-scale phylogenetics
err2026-02-09
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errOAAI
errNicola De Maio; Myrthe Willemsen; Samuel Martin; Zihao Guo; Abhratanu Saha; Martin Hunt; Nhan Ly-Trong; Bui Quang Minh; Zamin Iqbal; Nick Goldman
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New approaches to meta-analyze differences in skewness, kurtosis, and correlation
err2026-02-01
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PREAI
errPollo, Pietro; Drobniak, Szymon M.; Haselimashhadi, Hamed; Lagisz, Malgorzata; Mizuno, Ayumi; Wilson, Laura A. B.; Noble, Daniel W. A.; Nakagawa, Shinichi
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Associating protein residues in the literature with structural data
err2026-02-01
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PREAI
errVollmar, Melanie; Westrip, Simon; Nair, Sreenath; Balasubramaniyan, Balakumaran; Velankar, Sameer; Jones, Louise; Strickland, Peter
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The dynamics of mutational selection in cutaneous squamous carcinogenesis
err2026-01-12
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errOAAI
errGreta Skrupskelyte; Joanna C. Fowler; Stefan Dentro; Carine Winkler; Irina Abnizova; Niklaus Beumer; Roshan Sood; Thomas Quarrell; Charlotte King; Jivko Kamarashev; Emmanuella Guenova; Moritz Gerstung; Benjamin A. Hall; Liliane Michalik; Philip H. Jones
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Empowering biological knowledgebases: advances in human-in-the-loop AI-driven literature curation
err2026-01-01
err0
PREAI
errWood, Valerie; Jeffryes, Matt; Green, Andrew F.; Blum, Matthias; Orchard, Sandra; Panni, Simona; Quaglia, Federica; Rodriguez-Esteban, Raul; Seager, James; Tosatto, Silvio C. E.; Wittig, Ulrike; Harrison, Melissa
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AI in biocuration: challenges, opportunities, and a roadmap for sustainable integration
err2026-01-01
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PREAI
errArnaboldi, Valerio; Schriml, Lynn M.; Jeffryes, Matt; Li, Pengyuan; Bello, Susan; Sternberg, Paul; Bult, Carol; Cook, Charles E.
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A comprehensive database for biological data derived from sewage in five European cities
err2026-01-01
err0
PREAI
errBecsei, Agnes; Munk, Patrick; Fuschi, Alessandro; Otani, Saria; Steger, Jozsef; Visontai, David; Papp, Krisztian; Brinch, Christian; Kant, Ravi; Weinstein, Ilya; Vapalahti, Olli; De graaf, Miranda; Schapendonk, Claudia M. E.; Roelfsema, Jeroen; Van den beld, Maaike; Pijnacker, Roan; Franz, Eelco; Alba, Patricia; Battisti, Antonio; De cesare, Alessandra; Indio, Valentina; Troja, Fulvia; Sironen, Tarja; Oliveri, Chiara; Pasquali, Frederique; Liachko, Ivan; Auch, Benjamin; O'cathail, Colman; Banyai, Krisztian; Mako, Magdolna; Pollner, Peter; Koopmans, Marion; Csabai, Istvan; Remondini, Daniel; Aarestrup, Frank M.
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