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The Reactome Pathway Knowledgebase 2024

delete2023-11-06
delete140
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OA
AI
M
M Orlic-Milacic
D
Deidre Beavers
P
Patrick Conley
C
Chuqiao Gong
M
Marc Gillespie
J
Johannes Griss
R
Robin Haw
B
Bijay Jassal
L
Lisa Matthews
B
Bruce May
R
Robert Petryszak
E
Eliot Ragueneau
K
Karen Rothfels
C
Cristoffer Sevilla
V
Veronica Shamovsky
S
Stephan, Ralf
K
Krishna Kumar Tiwari
T
Thawfeek Varusai
J
Joel Weiser
A
A. Jordan Wright
G
Guanming Wu *
L
Lincoln Stein *
H
Henning Hermjakob *
P
Peter D’Eustachio *
DOI:10.1093/nar/gkad1025delete
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Abstract

Abstract

En 中文
The Reactome Knowledgebase (https://reactome.org), an Elixir and GCBR core biological data resource, provides manually curated molecular details of a broad range of normal and disease-related biological processes. Processes are annotated as an ordered network of molecular transformations in a single consistent data model. Reactome thus functions both as a digital archive of manually curated human biological processes and as a tool for discovering functional relationships in data such as gene expression profiles or somatic mutation catalogs from tumor cells. Here we review progress towards annotation of the entire human proteome, targeted annotation of disease-causing genetic variants of proteins and of small-molecule drugs in a pathway context, and towards supporting explicit annotation of cell- and tissue-specific pathways. Finally, we briefly discuss issues involved in making Reactome more fully interoperable with other related resources such as the Gene Ontology and maintaining the resulting community resource network. Graphical Abstract
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Journal

Nucleic Acids Research cover
Nucleic Acids Research
IF:
13.1
Papers:
3.6W
Citations:
29.0W

Organization

M
Medical University of Vienna
Scholars:
3.6W
Papers: 2.5W
Citations: 3.1W
O
Oregon Health & Science University
Scholars:
2.5W
Papers: 2.1W
Citations: 39
O
Ontario Institute for Cancer Research
Scholars:
1.3K
Papers: 689
Citations: 4.6K
U
university of toronto
Scholars:
14.7W
Papers: 12.0W
Citations: 165
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