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The Reactome Knowledgebase 2026 Ragueneau, Eliot; Gong, Chuqiao; Sinquin, Pierre; Sevilla, Cristoffer; Beavers, Deidre; Grentner, Alexander; Griss, Johannes; Hogue, Gregory F. J.; Li, Nancy T.; Matthews, Lisa; May, Bruce; Milacic, Marija; Mohammadi, Helia; Petryszak, Robert; Rothfels, Karen; Shamovsky, Veronica; Stephan, Ralf; Tiwari, Krishna; Weiser, Joel; Wright, Adam; Gillespie, Marc; Wu, Guanming; Stein, Lincoln; Hermjakob, Henning; D'eustachio, Peter Share Save
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Overture: an open-source genomics data platform Shiell, Mitchell; Bajari, Rosi; Andric, Dusan; Eubank, Jon; Chan, Brandon F.; Richardsson, Anders J.; Ali, Azher; Allabadi, Bashar; Alturmessov, Yelizar; Baker, Jared; Catton, Ann; Cullion, Kim; DeMaria, Daniel; Dos Santos, Patrick; Feher, Henrich; Gerthoffert, Francois; Ha, Minh; Haw, Robin A.; Kachru, Atul; Lepsa, Alexandru; Li, Alexis; Mistry, Rakesh N.; Nahal-Bose, Hardeep K.; Pejovic, Aleksandra; Rich, Samantha; Rivera, Leonardo; Schuette, Ciaran; Su, Edmund; Tisma, Robert; Uddin, Jaser; Wang, Chang; Wilmer, Alex N.; Xiang, Linda; Zhang, Junjun; Stein, Lincoln D.; Ferretti, Vincent; Courtot, Melanie; Yung, Christina K. Share Save
TRANS-SPECIES ANALYSIS OF REPLICATION-REPAIR DEFICIENT (RRD) MEDULLOBLASTOMA AND RESPONSE TO IMMUNE CHECKPOINT INHIBITION: AN IRRDC REPORT Das, Anirban; Fernandez, Nicholas; Levine, Adrian; Smith, Kyle; Wang, Evan; Galati, Melissa; Aamir, Zoya; Chung, Jill; Negm, Logine; Friedman, Hope; O'Flaherty, Katharine; Crump, Owen; Trinh, Quang; Nunes, Nuno; Bianchi, Vanessa; Stengs, Lucie; Edwards, Melissa; Stein, Lincoln; Bouffet, Eric; Taylor, Michael; Northcott, Paul; Ramaswamy, Vijay; Hawkins, Cynthia; Tabori, Uri Share Save
Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes Orlic-Milacic, Marija; Rothfels, Karen; Matthews, Lisa; Wright, Adam; Jassal, Bijay; Shamovsky, Veronica; Trinh, Quang; Gillespie, Marc E.; Sevilla, Cristoffer; Tiwari, Krishna; Ragueneau, Eliot; Gong, Chuqiao; Stephan, Ralf; May, Bruce; Haw, Robin; Weiser, Joel; Beavers, Deidre; Conley, Patrick; Hermjakob, Henning; Stein, Lincoln D.; DEustachio, Peter; Wu, Guanming Share Save
WormBase 2024: status and transitioning to Alliance infrastructure Sternberg, Paul W.; Van Auken, Kimberly; Wang, Qinghua; Wright, Adam; Yook, Karen; Zarowiecki, Magdalena; Arnaboldi, Valerio; Becerra, Andres; Brown, Stephanie; Cain, Scott; Chan, Juancarlos; Chen, Wen J.; Cho, Jaehyoung; Davis, Paul; Diamantakis, Stavros; Dyer, Sarah; Grigoriadis, Dionysis; Grove, Christian A.; Harris, Todd; Howe, Kevin; Kishore, Ranjana; Lee, Raymond; Longden, Ian; Luypaert, Manuel; Muller, Hans-Michael; Nuin, Paulo; Quinton-Tulloch, Mark; Raciti, Daniela; Schedl, Tim; Schindelman, Gary; Stein, Lincoln Share Save
Updates to the Alliance of Genome Resources central infrastructure Aleksander, Suzanne A.; Anagnostopoulos, Anna V.; Antonazzo, Giulia; Arnaboldi, Valerio; Attrill, Helen; Becerra, Andres; Bello, Susan M.; Blodgett, Olin; Bradford, Yvonne M.; Bult, Carol J.; Cain, Scott; Calvi, Brian R.; Carbon, Seth; Chan, Juancarlos; Chen, Wen J.; Cherry, J. Michael; Cho, Jaehyoung; Crosby, Madeline A.; De Pons, Jeffrey L.; D'Eustachio, Peter; Diamantakis, Stavros; Dolan, Mary E.; dos Santos, Gilberto; Dyer, Sarah; Ebert, Dustin; Engel, Stacia R.; Fashena, David; Fisher, Malcolm; Foley, Saoirse; Gibson, Adam C.; Gollapally, Varun R.; Gramates, L. Sian; Grove, Christian A.; Hale, Paul; Harris, Todd; Hayman, G. Thomas; Hu, Yanhui; James-Zorn, Christina; Karimi, Kamran; Karra, Kalpana; Kishore, Ranjana; Kwitek, Anne E.; Laulederkind, Stanley J. F.; Lee, Raymond; Longden, Ian; Luypaert, Manuel; Markarian, Nicholas; Marygold, Steven J.; Matthews, Beverley; McAndrews, Monica S.; Millburn, Gillian; Miyasato, Stuart; Motenko, Howie; Moxon, Sierra; Muller, Hans-Michael; Mungall, Christopher J.; Muruganujan, Anushya; Mushayahama, Tremayne; Nash, Robert S.; Nuin, Paulo; Paddock, Holly; Pells, Troy; Perrimon, Norbert; Pich, Christian; Quinton-Tulloch, Mark; Raciti, Daniela; Ramachandran, Sridhar; Richardson, Joel E.; Gelbart, Susan Russo; Ruzicka, Leyla; Schindelman, Gary; Shaw, David R.; Sherlock, Gavin; Shrivatsav, Ajay; Singer, Amy; Smith, Constance M.; Smith, Cynthia L.; Smith, Jennifer R.; Stein, Lincoln; Sternberg, Paul W.; Tabone, Christopher J.; Thomas, Paul D.; Thorat, Ketaki; Thota, Jyothi; Tomczuk, Monika; Trovisco, Vitor; Tutaj, Marek A.; Urbano, Jose-Maria; Van Auken, Kimberly; Van Slyke, Ceri E.; Vize, Peter D.; Wang, Qinghua; Weng, Shuai; Westerfield, Monte; Wilming, Laurens G.; Wong, Edith D.; Wright, Adam; Yook, Karen; Zhou, Pinglei; Zorn, Aaron; Zytkovicz, Mark Share Save
FAIR Header Reference genome: a TRUSTworthy standard Wright, Adam; Wilkinson, Mark D.; Mungall, Christopher; Cain, Scott; Richards, Stephen; Sternberg, Paul; Provin, Ellen; Jacobs, Jonathan L.; Geib, Scott; Raciti, Daniela; Yook, Karen; Stein, Lincoln; Molik, David C. Share Save
Oncogenic ETS fusions promote DNA damage and proinflammatory responses via pericentromeric RNAs in extracellular vesicles Ruzanov, Peter; Evdokimova, Valentina; Pachva, Manideep C.; Minkovich, Alon; Zhang, Zhenbo; Langman, Sofya; Gassmann, Hendrik; Thiel, Uwe; Orlic-Milacic, Marija; Zaidi, Syed H.; Peltekova, Vanya; Heisler, Lawrence E.; Sharma, Manju; Cox, Michael E.; McKee, Trevor D.; Zaidi, Mark; Lapouble, Eve; McPherson, John D.; Delattre, Olivier; Radvanyi, Laszlo; Burdach, Stefan E. G.; Stein, Lincoln D.; Sorensen, Poul H. Share Save
The Reactome Pathway Knowledgebase 2024 Milacic, Marija; Beavers, Deidre; Conley, Patrick; Gong, Chuqiao; Gillespie, Marc; Griss, Johannes; Haw, Robin; Jassal, Bijay; Matthews, Lisa; May, Bruce; Petryszak, Robert; Ragueneau, Eliot; Rothfels, Karen; Sevilla, Cristoffer; Shamovsky, Veronica; Stephan, Ralf; Tiwari, Krishna; Varusai, Thawfeek; Weiser, Joel; Wright, Adam; Wu, Guanming; Stein, Lincoln; Hermjakob, Henning; D'Eustachio, Peter Share Save
JBrowse 2: a modular genome browser with views of synteny and structural variation Diesh, Colin; Stevens, Garrett J.; Xie, Peter; Martinez, Teresa De Jesus; Hershberg, Elliot A.; Leung, Angel; Guo, Emma; Dider, Shihab; Zhang, Junjun; Bridge, Caroline; Hogue, Gregory; Duncan, Andrew; Morgan, Matthew; Flores, Tia; Bimber, Benjamin N.; Haw, Robin; Cain, Scott; Buels, Robert M.; Stein, Lincoln D.; Holmes, Ian H. Share Save
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A brain precursor atlas reveals the acquisition of developmental-like states in adult cerebral tumours Hamed, Akram A.; Kunz, Daniel J.; El-Hamamy, Ibrahim; Trinh, Quang M.; Subedar, Omar D.; Richards, Laura M.; Foltz, Warren; Bullivant, Garrett; Ware, Matthaeus; Vladoiu, Maria C.; Zhang, Jiao; Raj, Antony M.; Pugh, Trevor J.; Taylor, Michael D.; Teichmann, Sarah A.; Stein, Lincoln D.; Simons, Benjamin D.; Dirks, Peter B. Share Save
scRNA-seq in medulloblastoma shows cellular heterogeneity and lineage expansion support resistance to SHH inhibitor therapy (vol 10, 5829, 2019) Ocasio, Jennifer Karin; Babcock, Benjamin; Malawsky, Daniel; Weir, Seth J.; Loo, Lipin; Simon, Jeremy M.; Zylka, Mark J.; Hwang, Duhyeong; Dismuke, Taylor; Sokolsky, Marina; Rosen, Elias P.; Vibhakar, Rajeev; Zhang, Jiao; Saulnier, Olivier; Vladoiu, Maria; El-Hamamy, Ibrahim; Stein, Lincoln D.; Taylor, Michael D.; Smith, Kyle S.; Northcott, Paul A.; Colaneri, Alejandro; Wilhelmsen, Kirk; Gershon, Timothy R. Share Save
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WormBase in 2022-data, processes, and tools for analyzing Caenorhabditis elegans Davis, Paul; Zarowiecki, Magdalena; Arnaboldi, Valerio; Becerra, Andres; Cain, Scott; Chan, Juancarlos; Chen, Wen J.; Cho, Jaehyoung; Beltrame, Eduardo da Veiga; Diamantakis, Stavros; Gao, Sibyl; Grigoriadis, Dionysis; Grove, Christian A.; Harris, Todd W.; Kishore, Ranjana; Le, Tuan; Lee, Raymond Y. N.; Luypaert, Manuel; Muller, Hans-Michael; Nakamura, Cecilia; Nuin, Paulo; Paulini, Michael; Quinton-Tulloch, Mark; Raciti, Daniela; Rodgers, Faye H.; Russell, Matthew; Schindelman, Gary; Singh, Archana; Stickland, Tim; Van Auken, Kimberly; Wang, Qinghua; Williams, Gary; Wright, Adam J.; Yook, Karen; Berriman, Matt; Howe, Kevin L.; Schedl, Tim; Stein, Lincoln; Sternberg, Paul W. Share Save
COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms (vol 17, e10387, 2021) Ostaszewski, Marek; Niarakis, Anna; Mazein, Alexander; Kuperstein, Inna; Phair, Robert; Orta-Resendiz, Aurelio; Singh, Vidisha; Aghamiri, Sara Sadat; Acencio, Marcio Luis; Glaab, Enrico; Ruepp, Andreas; Fobo, Gisela; Montrone, Corinna; Brauner, Barbara; Frishman, Goar; Monraz Gomez, Luis Cristobal; Somers, Julia; Hoch, Matti; Kumar Gupta, Shailendra; Scheel, Julia; Borlinghaus, Hanna; Czauderna, Tobias; Schreiber, Falk; Montagud, Arnau; Ponce de Leon, Miguel; Funahashi, Akira; Hiki, Yusuke; Hiroi, Noriko; Yamada, Takahiro G.; Drager, Andreas; Renz, Alina; Naveez, Muhammad; Bocskei, Zsolt; Messina, Francesco; Bornigen, Daniela; Fergusson, Liam; Conti, Marta; Rameil, Marius; Nakonecnij, Vanessa; Vanhoefer, Jakob; Schmiester, Leonard; Wang, Muying; Ackerman, Emily E.; Shoemaker, Jason E.; Zucker, Jeremy; Oxford, Kristie; Teuton, Jeremy; Kocakaya, Ebru; Summak, Gokce Yagmur; Hanspers, Kristina; Kutmon, Martina; Coort, Susan; Eijssen, Lars; Ehrhart, Friederike; Rex, D. A. B.; Slenter, Denise; Martens, Marvin; Pham, Nhung; Haw, Robin; Jassal, Bijay; Matthews, Lisa; Orlic-Milacic, Marija; Senff-Ribeiro, Andrea; Rothfels, Karen; Shamovsky, Veronica; Stephan, Ralf; Sevilla, Cristoffer; Varusai, Thawfeek; Ravel, Jean-Marie; Fraser, Rupsha; Ortseifen, Vera; Marchesi, Silvia; Gawron, Piotr; Smula, Ewa; Heirendt, Laurent; Satagopam, Venkata; Wu, Guanming; Riutta, Anders; Golebiewski, Martin; Owen, Stuart; Goble, Carole; Hu, Xiaoming; Overall, Rupert W.; Maier, Dieter; Bauch, Angela; Gyori, Benjamin M.; Bachman, John A.; Vega, Carlos; Groues, Valentin; Vazquez, Miguel; Porras, Pablo; Licata, Luana; Iannuccelli, Marta; Sacco, Francesca; Nesterova, Anastasia; Yuryev, Anton; de Waard, Anita; Turei, Denes; Luna, Augustin; Babur, Ozgun; Soliman, Sylvain; Valdeolivas, Alberto; Esteban-Medina, Marina; Pena-Chilet, Maria; Rian, Kinza; Helikar, Tomas; Puniya, Bhanwar Lal; Modos, Dezso; Treveil, Agatha; Olbei, Marton; De Meulder, Bertrand; Ballereau, Stephane; Dugourd, Aurelien; Naldi, Aurelien; Noel, Vincent; Calzone, Laurence; Sander, Chris; Demir, Emek; Korcsmaros, Tamas; Freeman, Tom C.; Auge, Franck; Beckmann, Jacques S.; Hasenauer, Jan; Wolkenhauer, Olaf; Willighagen, Egon L.; Pico, Alexander R.; Evelo, Chris T.; Gillespie, Marc E.; Stein, Lincoln D.; Hermjakob, Henning; D'Eustachio, Peter; Saez-Rodriguez, Julio; Dopazo, Joaquin; Valencia, Alfonso; Kitano, Hiroaki; Barillot, Emmanuel; Auffray, Charles; Balling, Rudi; Schneider, Reinhard Share Save
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