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NAR Genomics and Bioinformatics

IF2.8
Papers264
Citations
Journal Papers 259
Publication Date
Detect de novo expressed ORFs in transcriptomes with DESwoMAN
delete2026-10-07
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deleteAnna Grandchamp; Marie Lebherz; Elias Dohmen
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Nanopore sequencing combined with adaptive sampling and NanoExpansion enables accurate characterization of repeat expansion disorders
delete2026-10-06
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deleteLuca Morandi; Francesco Casadei; Sara De Fanti; Luigi Bonan; Francesco Ravaioli; Flavia Palombo; Alessia Fiorentino; Silvia de Pasqua; Veria Vacchiano; Patrizia Avoni; Giovanni Rizzo; Sabina Capellari; Edoardo Ruggeri; Vincenzo Donadio; Gastone Castellani; Maria Giulia Bacalini; Raffaele Lodi; Rocco Liguori; Valerio Carelli; Caterina Tonon; null
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Integrating network medicine and foundation models reveals cell-type-specific regulatory alterations in Alzheimer’s disease
delete2026-10-06
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deleteAndrea Álvarez-Pérez; Alejandro Rodríguez-González; Jan Baumbach; Lucía Prieto-Santamaría; Mhaned Oubounyt
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Characterization of immunoglobulin loci in Pongo abelii and Pongo pygmaeus: Insights from multi-genome annotation and IMGT-based curation
delete2026-09-28
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deleteShamsa Batool; Guilhem Zeitoun; Chahrazed Debbagh; Boutayna Dhioui; Géraldine Folch; Joumana Jabado-Michaloud; Véronique Giudicelli; Sofia Kossida
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Unlocking cis-regulatory landscapes across 500 million years of evolution and disease mechanisms
delete2026-09-15
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deleteTássia Mangetti Gonçalves; Casey L Stewart; Samantha D Baxley; Jason Xu; Kevin Boyer; Bijesh George; Daofeng Li; Chengran Yang; Harrison W Gabel; Xianhua Piao; Carlos Cruchaga; Yang E Li; Ting Wang; Oshri Avraham; Guoyan Zhao
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Customizable host and viral transcript enrichment using CRISPR–Cas9 long-read sequencing for characterization of low-to-moderate abundance isoforms
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deleteAn N T Nguyen; Jianshu Zhang; Shuxin Zhang; Miranda E Pitt; Devika Ganesamoorthy; Svenja Fritzlar; Jessie J -Y Chang; Sarah L Londrigan; Lachlan J M Coin
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FANTASIA suite: a reproducible and configurable framework for embedding-based functional annotation of proteins
delete2026-09-11
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deleteFrancisco M Pérez-Canales; Àlex Domínguez-Rodríguez; Belén Carbonetto; Rosa Fernández; Ildefonso Cases; Ana M Rojas; null
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Long-read based detection of large copy number variants with potential functional significance using the ContextSV structural variant caller
delete2026-09-09
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deleteJonathan Elliot Perdomo; Mian Umair Ahsan; Jasmine Akoto; James Bauer; Naiara Akizu; Kai Wang
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VicMAG, an open-source tool for visualizing circular metagenome-assembled genomes highlighting bacterial virulence and antimicrobial resistance
delete2026-09-08
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deleteYusuke Tsuda; Yasuhiro Tanizawa; Thi My Hanh Vu; Yosuke Nishimura; Masaki Shintani; Haruka Abe; Futoshi Hasebe; Ikuro Kasuga; Miki Nagao; Masato Suzuki
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LAMBDA: a prophage detection benchmark for genomic language models
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deleteLeAnn M Lindsey; Nicole L Pershing; Keith Dufault-Thompson; Ho-jin Gwak; Anisa Habib; Aaron Schindler; Arjun Rakheja; June L Round; W Zac Stephens; Anne J Blaschke; Hari Sundar; Xiaofang Jiang
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SURE-Pipe: a pipeline to compare genomes and extract shared and unique regions
delete2026-09-07
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deleteInfant Thomas; Abhishek B Kannur; Arya Sudheer; Debyani Samantray; Akshay Pramod Ware; Budheswar Dehury; Sandipan Chakraborty; Bobby Paul
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Proportionality-based association metrics in count compositional data
delete2026-09-04
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deleteKevin McGregor; Nneka Okaeme; Reihane Khorasaniha; Simona Veniamin; Juan Jovel; Richard Miller; Ramsha Mahmood; Morag Graham; Christine Bonner; Charles N Bernstein; Douglas L Arnold; Amit Bar-Or; Ruth Ann Marrie; Julia O’Mahony; Eluen Ann Yeh; Yinshan Zhao; Brenda Banwell; Emmanuelle Waubant; Natalie Knox; Gary Van Domselaar; Feng Zhu; Ali I Mirza; Helen Tremlett; Heather Armstrong
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cgDist: Nucleotide-level distance calculation from cgMLST allelic profiles
delete2026-09-02
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deleteAndrea de Ruvo; Pierluigi Castelli; Andrea Bucciacchio; Iolanda Mangone; Verónica Mixão; Vítor Borges; Michele Flammini; Nicolas Radomski; Adriano Di Pasquale
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IsoformSwitchAnalyzeR v2: analysis of functional isoform changes in long-read and single-cell sequencing data
delete2026-08-25
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deleteChunxu Han; Jeroen Gilis; Elena Iriondo Delgado; Lieven Clement; Kristoffer Vitting-Seerup
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