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COMPUTATIONAL METHODS IN SYSTEMS BIOLOGY, CMSB 2025

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Evaluating PDE Discovery Methods for Multiscale Modeling of Biological Signals
deleteCOMPUTATIONAL METHODS IN SYSTEMS BIOLOGY, CMSB 2025
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deleteDucos, Andrea; Denizot, Audrey; Guyet, Thomas; Berry, Hugues
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Seed Inference in Interacting Microbial Communities Using Combinatorial Optimization
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deleteNedjad, Chabname Ghassemi; Mendoza, Sebastian Nelson; Frioux, Clemence; Pauleve, Loic
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Minimal Metabolic Exchanges for Microbial Communities in a Chemostat at Steady State
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deleteMoawad, Alix; Stelling, Jorg
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Computation of Immediate Neighbours of Monotone Boolean Functions
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deleteCury, Jose E. R.; Roxo, Patricia Tenera; Manquinho, Vasco; Chaouiya, Claudine; Monteiro, Pedro T.
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Efficient Stochastic Simulation of Gene Regulatory Networks Using Hybrid Models of Transcriptional Bursting
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deleteGaillard, Mathilde; Herbach, Ulysse
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A Rule-Based Modeling Approach for Studying Animal Collectives: A Case Study of Juvenile Honeybee Thermotaxis
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deleteBougueon, Matthieu; Petrov, Tatjana; Salazar, Albin
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Decoding Gene Regulation in Alzheimer's Disease with Transfer Learning and Explainable Machine Learning
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deletePeignier, Sergio; Lo Van, Amanda; Meunier, Yann; Pauliat, Elea; Zouari, Matis; Calevro, Federica
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Interaction Graphs of Phytoplankton Species Interactions Using Logical Learning
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deleteEyraud, Madeleine; Folschette, Maxime; Inoue, Katsumi; Lefebvre, Sebastien; Lhoussaine, Cedric
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Optimal Input Design for Model Selection in Systems with Cell-to-Cell Variability
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deleteStallvik, Andrea; Kaltenbach, Hans-Michael; Stelling, Jorg
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On Model Reductions of Boolean Networks
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deleteChaouiya, Claudine; Feret, Jerome; Roxo, Patricia Tenera
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Optimizing Feature Extraction Methods Using Class Similarity Ratio for EMG-Based Hand Gesture Classification
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deleteEscarzaga, Felicity; Donnelly, Brian; Winfree, Kyle
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A Formal Approach to Identify Structural Patterns in RNA
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deleteLoreti, Michele; Quadrini, Michela; Scoccia, Matteo; Tesei, Luca
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Eukaryotic Ancestry in a Finite World
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deleteLuiselli, Juliette; Lafond, Manuel
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A Model-Free Control Strategy for Selective Disruption of Parkinsonian Brain Oscillations
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deleteJoin, Cedric; Orlowski, Jakub; Chaillet, Antoine; Lowery, Madeleine; Mounier, Hugues; Fliess, Michel
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Kolmogorov-Arnold Network for Gene Regulatory Network Inference
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deleteTong, Tsz Pan; Wang, Aoran; Panagopoulos, George; Pang, Jun
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Continuous Petri Nets Faithfully Fluidify Most Permissive Boolean Networks
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deleteHaar, Stefan; Kolcak, Juri
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Reachability Analysis for Parametric Rule-Based Models
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deleteFeret, Jerome; Ghidini, Rebecca
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AEON 2025: Robust Control of Partially-Specified Boolean Networks
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deleteVesely, Vojtech; Smijakova, Eva; Pastva, Samuel; Benes, Nikola; Safranek, David
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Three-State Gene Expression Model Parameterized for Single-Cell Multi-omics Data
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deletePeyric, Thibaut; Lepoutre, Thomas; Crombach, Anton; Guyet, Thomas
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Looking for Signs: Reasoning About FOBNNs Using SAT
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deleteSchurr, Hans-Jorg; Vaginay, Athenais
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