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Microbiome

IF12.7
Papers2572
Citations28285
Journal Papers 2502
Publication Date
Integrative characterization of host–microbiome-diet axes during early-life development of the murine gut
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deleteCarta Giacomo; Feng Xian; Daniel Malzl; Manuela Schmidt; David Gómez-Varela
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Antibody-mediated immune surveillance as an organizing axis of gut microbiota structure
delete2026-10-06
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deleteSimeon Nthuku; Delphine Sterlin; Nicolas Pons; Christophe Parizot; Martin Larsen; Agnes Rastetter; Yannick Marie; Savine Vicart; Elisabeth Maillart; Caroline Papeix; Guy Gorochov; Lejla Imamovic
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Gut microbiota-derived phenylalanine metabolites exacerbate elderly-onset acute pancreatitis by promoting mitophagy and enhancing cell death
delete2026-10-05
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deleteLingming Kong; Fengyu Shi; Hongru Kong; Haonan Xie; Zhenyan Pan; Zhu Liu; Dandan Yu; Wen Chen; Hongwei Sun; Yuepeng Jin; Jinhui Wang; Akmal Ergashev; Ting Li; Yi Wang; Jin-San Zhang; Martin E Fernandez-Zapico; Chunwu Zhang; Gang Chen
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Phage-based depletion of Variovorax reveals interactions within intact microbiomes
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deleteTomas Hessler; Dawn Chiniquy; Benjamin A. Adler; Jordan Hoff; Eliana Tucker; Robert J. Huddy; Rohan Sachdeva; Shufei Lei; Susan T. L. Harrison; Rodolphe Barrangou; Spencer Diamond; Adam M. Deutschbauer; Jillian F. Banfield
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SCiMS: Sex Calling in Metagenomic Sequences
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deleteHanh N. Tran; Kobie J. Kirven; Emily R. Davenport
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Temperature-dependent phage-bacterium coexistence strategy mediates the intestinal microbial community diversity in shrimp
delete2026-10-03
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deleteZhixuan Deng; Dongwei Hou; Renjun Zhou; Shenzheng Zeng; Qi Chen; Lingyu Zhang; Qilu Hou; Wenjun Wang; Donghao Wang; Shaoping Weng; Jianguo He; Zhijian Huang
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Functional division between root endosphere and rhizosphere microbiomes supports seagrass holobiont resilience under high nutrient and sulfide exposure
delete2026-10-02
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deleteWenqian Qi; Zhijian Jiang; Xu Long; Jing Ren; Yin Huang; Uditha Thejan Egodauyana; Yang Fang; Yunchao Wu; Songlin Liu; Xiaoping Huang
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Viable microbial ecology and functional potential of the Integrated Lunar-Mars Analog Habitat revealed by multi-omics analyses
delete2026-09-28
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deleteHaley O. Boles; Edner Hernandez; Jeremy Kahsen; Takeo Suzuki; Natsuki Okochi; Trisha Jeon; Surabhi Naik; Neha Joshi; Anna Tumeo; Wei-Jen Lin; Georgios Miliotis; Pablo de León; Stefan J. Green; Kasthuri Venkateswaran
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Error control for microbiome mediation analysis: benchmarking and remedy
delete2026-09-25
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deleteQiyu Wang; Yiluan Li; Yunfei Peng; Zheng-Zheng Tang
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Sex-specific effects of early-life arsenic exposure on body weight, arsenic metabolism, and gut microbiome stability in C57BL/6J mice
delete2026-09-18
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deleteShimao Xiong; Xiyan Jiang; Yue Wu; Rui Li; Fang Zhao; Peng Xiao; Yuntao Yang; Zhixi Li; Bing Xie; Xue Xu; Xiaolin Cai; Naiyi Yin; Yanshan Cui
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TrIdent—an R package to automate transductomics analysis of virus-like particle mediated DNA mobilization
delete2026-09-16
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deleteJessie L. Maier; Craig Gin; Jorden Rabasco; Yixuan Yang; Avery Bass; Wynter Spencer; Breck A. Duerkop; Benjamin Callahan; Manuel Kleiner
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Lung microbiota dysbiosis exacerbates influenza virus infection
delete2026-09-15
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deleteHai Chang Yin; Xin Yu Zhang; Song Liu; Xinjie Jiang; Tian Fei Yu; He Zhang; Di Liu; Chang You Xia
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Technical replicates and multiple sequencing approaches reveal weak and inconsistent microbiome signals in lung tumour and blood samples from patients with lung cancer
delete2026-09-14
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deleteVanessa DeClercq; André M. Comeau; Alessi Kwawukume; Rowan Murphy; Nidhi R. Parmar; Dylan P. Quinn; Robyn Wright; Alison Wallace; Morgan G. I. Langille
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From under-ice accumulation to open-water oxidation: microbial regulation of methane emissions in high-altitude proglacial lakes
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deleteMeiqi Huang; Shengjie Li; Guangli Mu; Ran Yan; Xiaodong Li; Qing Yang; Bo Shao; Bingya Zhang; Qianggong Zhang; Yindong Tong
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GPR35 regulates colitis-associated anxiety susceptibility in a microbiome-gut-brain-axis dependent manner
delete2026-09-11
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deleteYaojiang Liu; Shengjie Huang; Ying Yang; Wenqiao Fu; Can Cai; Chang Liu; Mao Li; Yingxue Yang; Li Zhong; Jing Lei; Feng Xu; Xingshu Li; Wenqiang Luo; Juan Li; Ruizao Zheng; Bo Ning; Song He
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Exposure to antibiotics modifies the immune profiles of bacterial extracellular vesicles from common vaginal anaerobes
delete2026-09-10
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deleteYu Hasegawa; Olivia Swain; Urvija Rajpal; Michael France; Liqhwa Ncube; Ilaria Mogno; Hannah Zierden; Jacques Ravel; Michal A. Elovitz
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Recombination maintains metastable viral populations across global hypersaline ecosystems
delete2026-09-10
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deleteJose M. Haro-Moreno; Juan J. Roda-Garcia; Kaiyang Zheng; Mario López-Pérez
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Networks and genome-resolved analyses reveal persistent particle-mediated coupling between prokaryotes and eukaryotic plankton
delete2026-09-07
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deleteXiao Ma; Jia Luo; Yihong Wu; Sheng Dai; MinXiao Wang; Chaolun Li
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Highly active sulfate-reducing bacteria drive biogenic souring in oil reservoirs: insights from metabolic capability and microbial interactions
delete2026-09-07
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deleteTianhua Lv; Wenzhuo Tian; Zhiwei Wang; Wenwen Xu; Mingchang Li; Yuan Yun; Guoqiang Li; Ting Ma
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Virome analysis reveals an arthropod-specific RNA virus that enhances host adaptation to stress
delete2026-09-05
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deleteXin An; Siyu Wei; Mengling Chen; Yufei Shi; Yanchun Zhang; Jin-Jun Wang; Jinzhi Niu
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