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Microbial Genomics

IF4
Papers1463
Citations5567
Journal Papers 1444
Publication Date
Direct nanopore sequencing of Mycobacterium tuberculosis on sputa and rescue of suboptimal results to enhance transmission surveillance
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deleteSaleeb, Sheri M.; Marcos-Abellan, Andrea; Fernandez, Maria Teresa Cabezas; Vallejo-Godoy, Silvia; Martinez-Lirola, Miguel; Ramirez, Guadalupe Bernal; Herranz-Martin, Marta; Buenestado-Serrano, Sergio; Pardo-Diaz, Alfonso; Serrano, Maria Jesus Ruiz; Munoz, Patricia; Perez-Lago, Laura; de Viedma, Dario Garcia
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Integrative and conjugative elements carrying high-level gentamicin resistance genes in Streptococcus dysgalactiae subsp. equisimilis from horses
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deleteRochegue, Tony; Hughes, Sandrine; Saras, Estelle; Gillet, Benjamin; Drapeau, Antoine; Glaser, Philippe; Madec, Jean-Yves; Haenni, Marisa; Lupo, Agnese
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Evidence supporting the first secondary chromosome in Actinobacteria as a hallmark of the Embleya genus
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deleteGomez-Escribano, Juan Pablo; Dorai-Raj, Siobhan; Baker, David; Lacey, Ernest; Wilkinson, Barrie; Booth, Thomas J.
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Genomic diversity of culturable Paraburkholderia and Burkholderia species isolated from Bornean rainforest rhizosphere
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deleteAlswat, Amal; Webster, Gordon; Mullins, Alex J.; Petrova, Yoana D.; Davies, Benjamin J.; Jones, Angharad R.; Murray, James A. H.; Weightman, Andrew J.; Goossens, Benoit; Mahenthiralingam, Eshwar
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Diversity and prevalence of dairy streptococcal phages in two European dairy fermentation facilities over a one- year period
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deleteWhite, Kelsey; Szafran, Joanna Danuta; McDonnell, Brian; Chawande, Gargee; Faherty-McGrath, Louisa; Lugli, Gabriele Andrea; Ventura, Marco; Eraclio, Giovanni; Volonte, Federica; Dal Bello, Fabio; van Sinderen, Douwe; Mahony, Jennifer
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From classification to confirmation: verifying taxonomic classifications by mapping metagenomic reads to reference genomes
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deleteWright, Robyn J.; Fisher, Benjamin R.; Comeau, Andre M.; Langille, Morgan G. I.
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Conservation, origin, and remodeling of the phenyl acetate degradation pathway
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deleteArreola-Calderon, Jimena; Hurtado-Ramirez, Juan-Manuel; Cruz-Santiago, Erick; Gutierrez-Rios, Rosa-Maria
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Mammal- infecting DNA viruses identified in lemurs and rodents in Madagascar mirror the evolutionary history of their hosts
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deletePaietta, Elise N.; Johnston, Rachel A.; Kraberger, Simona; Randrianarisoa, Santatriniaina F.; Razanamahenina, Tahina T.; Ramboninarimalala, Antsa; Velontsara, Jean-Baptiste; Raherinirina, Toussaint G.; Raveloson, Laurent; Finley, Nina L.; Baitchman, Eric; McAdoo, Brian G.; Yoder, Anne D.; Varsani, Arvind
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Towards accurate genomic detection of fungal antimicrobial resistance: progress in fungal resistance databases and bioinformatic tools
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deleteGador-Whyte, Andrew P.; Rhodes, Johanna; Farrer, Rhys A.; Bakker, Sibbe L.; Wirth, Wytamma; Coldbeck-Shackley, Rosa C.; Howden, Benjamin P.; Kwong, Jason C.; Sherry, Norelle L.; Seemann, Torsten
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Characterization of Ornithobacterium hominis colonization dynamics and interaction with the nasopharyngeal microbiome in a South African birth cohort
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deleteDe Allende, Celine C.; Salter, Susannah J.; Brigg, Siobhan E.; Boardman, Micaela; Claassen-Weitz, Shantelle; Mwaikono, Kilaza S.; Workman, Lesley; Zar, Heather J.; Nicol, Mark P.; Parkhill, Julian; Dube, Felix S.
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Unravelling the unique essential genes of Streptococcus canis through transposon-directed insertion-site sequencing
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deleteAubry, Etienne; Katsburg, Miriam M. D.; Hanke, Dennis; Eichhorn, Inga; Wolf, Silver A.; Kopenhagen, Anna; Bergmann, Simone; Waller, Andrew; Parkhill, Julian; Fulde, Marcus
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Geographic clustering and population structures of Campylobacter jejuni and Campylobacter coli in South and Southeast Asian poultry systems
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deleteLehri, Burhan; Nhung, Le Thi Hong; Ghosh, Keya; Logno, Tahia Ahmed; Hasan, Mahamudul; Weerasooriya, G.; Priyantha, M. A. R.; De Alwis, P. S.; Janagaraj, Venkateshprabhu; Manoharan, Zayina Zondervenni; Dantroliya, Sadiq; Pandit, Ramesh; Joshi, Chaitanya; Huong, Luu Quynh; Anandachitra, M.; Joshi, Madhvi; Mahmud, Rashed; Ngoc, Pham Thi; Coombs, Archibald; Li, Ying Ying Chrystal; Ramachandra, Mahati; Butt, Saira; Ronald, Samuel M.; Conan, Anne; Biswas, Paritosh Kumar; Samad, Mohammed Abdus; Kalupahana, Ruwani; Ajjampur, Sitara Swarna Rao; Fournie, Guillaume; Wren, Brendan W.; Tomley, Fiona; Blake, Damer P.; Stabler, Richard A.
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Genomic characterization of invasive Streptococcus pneumoniae isolates from a southern Taiwan medical centre, 2015-2023
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deleteLiu, Poyen; Venero, Anne-Kathryn; Tran, Theresa; Metcalf, Benjamin J.; Chochua, Sopio; Li, Yuan; Huang, Yung-Feng; Lee, Maw-Sheng
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Comparative genomics and molecular insights into smooth and rough clinical isolates of Mycobacterium abscessus
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deleteKumar, Rajender; Braian, Clara; Froberg, Gabrielle; Forsman, Lina Davies; Schon, Thomas
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Genomic analysis of Salmonella Typhi from a typhoid conjugate vaccine trial
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deleteKutambe, Belson M.; Patel, Priyanka D.; Chizani, Kenneth; Silungwe, Niza; Kukacha, Christopher; Carey, Megan E.; Meiring, James E.; Laurens, Matthew B.; Gordon, Melita A.; Ashton, Philip M.
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Using pangenome variation graphs to improve mutation detection in a large DNA virus
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deleteDowning, Tim; Tennakoon, Chandana; Lasecka-Dykes, Lidia; Wright, Caroline
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Genomic epidemiology of Streptococcus pneumoniae GPSC6: post-vaccine expansion of β-lactam-susceptible serotype 24F in Europe
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deleteOsnes, Magnus N.; Taxt, Arne M.; Gladstone, Rebecca A.; Bjornstad, Martha L.; Straume, Daniel; Eldholm, Vegard
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Sulphur metabolism as a key factor in the evolution of environmental adaptation of Acidihalobacter
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deleteVergara, Eva; Khaleque, Himel Nahreen; Neira, Gonzalo; Watkin, Elizabeth L. J.; Valdes, Jorge H.; Holmes, David S.
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Uncovering resistance pathways to first- and last-line antibiotics in Mycobacterium tuberculosis populations
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deleteSrilohasin, Prapaporn; Williams, Jasmine M.; Tay, Aidan P.; Gillieatt, Brodie F.; Pascoe, Daniel R.; Maharjan, Ram P.; Chaipraset, Angkana; Ajawatanawong, Pravech; Cain, Amy K.
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