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IEEE-ACM Transactions on Computational Biology and Bioinformatics

IF3.4
Papers3267
Citations6417
Journal Papers 3272
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A Biophysical Prior-Based Hierarchical Graph Pooling Strategy for Protein Function Prediction
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IF3.4
delete2026-06-10
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deleteYanbin Gu; Shiming Zhao; Lingzhi Liu; Yanrui Ding
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scGDCF: Graphical Deep Clustering With Fused Common Information for Single-Cell RNA-Seq Data
deleteIEEE-ACM Transactions on Computational Biology and Bioinformatics
IF3.4
delete2026-06-01
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deleteYao Dong; Kunyu Li; Yongfeng Dong; Ziyu Ren; Jiaxue Zhang; Yushan Hu; Xuekui Zhang
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Hierarchical Molecular Attention Network: Improving Molecular Property Prediction Through Substructure Identification
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IF3.4
delete2026-05-27
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deleteLiangzhe Chen; Wei Li; Xiaohui Cui; Guoqiang Zhang; Qinghua Li; Haojun Zhu; Jia Wang; Yizhang Jiang
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AdPrST:An Adversarial Graph Deep Learning Pre-Clustering Framework for Deciphering Spatiotemporal Structures in Spatially Resolved Transcriptomics
deleteIEEE-ACM Transactions on Computational Biology and Bioinformatics
IF3.4
delete2026-05-27
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deleteHaoyuan Ma; Shensi Huang; Haiyun Wang; Jianping Zhao; Junfeng Xia
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Minimum Description Length-Driven Fragment Mining for Pretraining Molecule Property Prediction Model
deleteIEEE-ACM Transactions on Computational Biology and Bioinformatics
IF3.4
delete2026-05-26
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deleteXing Cai; Tong Zhang; Yide Qiu; Xudong Wang; Baotong Su; Zhen Cui
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FGAIM: Identifying Drug-Target Activation and Inhibition Mechanisms via Inductive Graph Neural Networks Based on Fine-Grained Interaction Strategies
deleteIEEE-ACM Transactions on Computational Biology and Bioinformatics
IF3.4
delete2026-05-21
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deleteYi Tang; Yongxian Fan; Guicong Sun; Mengxin Zheng
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WEmarker: Breast Cancer-Specific Prognostic Analysis With Weighted Multiplex Network Embedding
deleteIEEE-ACM Transactions on Computational Biology and Bioinformatics
IF3.4
delete2026-05-14
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deleteXingyi Li; Junming Li; Zhelin Zhao; Huihui Kong; Min Li; Xuequn Shang
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A Multi-Branch Feature Fusion Transformer Network and Its Application in Neck Ultrasound Detection
deleteIEEE-ACM Transactions on Computational Biology and Bioinformatics
IF3.4
delete2026-05-13
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deleteQing Guo; Jie Yang; Ming-an Yu; Xiaoyu Yang; Ying Wei; Zhenlong Zhao; Huaqing Wang
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A Realistic Control Approach for Set Stabilization of Complex Biological Networks With Logical Models
deleteIEEE-ACM Transactions on Computational Biology and Bioinformatics
IF3.4
delete2026-05-13
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deleteJung-Min Yang; Namhee Kim; Kwang-Hyun Cho
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Breast Cancer Biomarker Discovery Using an Enhanced Quantum-Based Avian Navigation Optimizer and Ensemble Learning Model
deleteIEEE-ACM Transactions on Computational Biology and Bioinformatics
IF3.4
delete2026-05-11
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deleteMorteza Rakhshaninejad; Mohammad Fathian; Navid Yazdanjue; Amir H. Gandomi; Farnaz Barzinpour
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DiffuST: A Latent Diffusion Model for Spatial Transcriptomics Denoising
deleteIEEE-ACM Transactions on Computational Biology and Bioinformatics
IF3.4
delete2026-05-05
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deleteShaoqing Jiao; Dazhi Lu; Xi Zeng; Tao Wang; Yongtian Wang; Yunwei Dong; Jiajie Peng
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GATTCR: A Graph Attention Network With Multi-Feature Fusion for Peripheral Blood TCR Repertoire Classification
deleteIEEE-ACM Transactions on Computational Biology and Bioinformatics
IF3.4
delete2026-03-24
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deleteHengwei Ju; Deying Kong; Yuhao Tao; Fei Wang
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scGHSOM: A Hierarchical Framework for Single-Cell Data Clustering and Visualization
deleteIEEE-ACM Transactions on Computational Biology and Bioinformatics
IF3.4
delete2025-07-29
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deleteShang-Jung Wen; Jia-Ming Chang; David Jing-Wei Chen; Fang Yu
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CPOne: Enhancing Prediction of Compound-Protein Interactions Through One-Shot Meta Learning
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IF0
delete2025-07-01
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deleteKuan Xu; Kuo Yang; Chongyu Wang; Xinyan Wang; Hanyu Yuan; Qiang Zhu; Jian Yu; Xuezhong Zhou
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Kernelized Fuzzy System for Predicting Therapeutic Peptides via Deep Stacked Encoder
deleteieee acm transactions on computational biology and bioinformatics
IF0
delete2025-07-01
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deleteXiaoyi Guo; Yijie Ding; Quan Zou
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Autoencoder-Transformed Transcriptome Improves Genotype-Phenotype Association Studies
deleteieee acm transactions on computational biology and bioinformatics
IF0
delete2025-07-01
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deleteQing Li; Jiayi Bian; Janith Weeraman; Zilong Zhang; Albert Leung; Qi-Xuan Ding; Thierry Chekouo; Lang Wu; Jun Yan; Jingjing Wu; Quan Long
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Deep Probabilistic Matrix Factorization on Graphs: Application to Drug Repositioning in Antimicrobial Resistance
deleteieee acm transactions on computational biology and bioinformatics
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delete2025-07-01
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deleteSayantika Chatterjee; Stuti Jain; Kriti Kumar; Emilie Chouzenoux; Angshul Majumdar
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Molecular Dynamics-Powered Hierarchical Geometric Deep Learning Framework for Protein-Ligand Interaction
deleteieee acm transactions on computational biology and bioinformatics
IF0
delete2025-07-01
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deleteMingquan Liu; Shuting Jin; Houtim Lai; Longyue Wang; Jianmin Wang; Zhixiang Cheng; Xiangxiang Zeng
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SSRAAI: Learning Sequence and Structural Representations to Predict Antibody-Antigen Interactions
deleteieee acm transactions on computational biology and bioinformatics
IF0
delete2025-07-01
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deleteBin Wang; Hongye Yang; Jiarui Liang; Songhui Rao; Ting Yan; Yuhui Liu; Xinyun Li; Jie Xiang; Huiqing Wang; Yu Xia; Ying Li
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Escaping the Drug-Bias Trap: Using Debiasing Design to Improve Interpretability and Generalization of Drug-Target Interaction Prediction
deleteieee acm transactions on computational biology and bioinformatics
IF0
delete2025-07-01
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deletePeidong Zhang; Jianzhu Ma; Ting Chen
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