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Journal of Computational Biology

IF1.6
Papers44
Citations5068
Journal Papers 44
Publication Date
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Special Issue: RECOMB Satellite Conference on Comparative Genomics (RECOMB-CG 2025)
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IF1.6
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deleteSong, Giltae
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A Cross-Order Comparative Genomics Analysis of Insect Innate Immunity Suggests Niche-Specific Adaptation
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deleteShelke, Triveni; Gupta, Vanika; Gupta, Ishaan
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A REsampling and Visual EvALuation Method to Detect and Map Local Model Violations During Biomolecular Sequence Analysis
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deleteGao, Meijun; Liu, Kevin J.
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Probability-Based Sequence Comparison Finds Pre-Eutherian Nuclear Mitochondrial DNA Segments in Mammalian Genomes
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IF1.6
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deleteHuang, Muyao; Frith, Martin C.
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CherryRed: A Software Implementation of Cherry Distance with a New Optimization and Heuristic
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deleteLandry, Kaari; Tremblay-Savard, Olivier
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Exact and Asymptotic Counts of Binary Phylogenetic Networks with a Few Reticulation Events
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IF1.6
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deleteYu, Hao; Fuchs, Michael; Yu, Guan-Ru; Zhang, Louxin
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Simple and Thorough Detection of Related Sequences with Position-Varying Probabilities of Substitutions, Insertions, and Deletions
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IF1.6
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deleteFrith, Martin C.; Boppert, Patrick; Styll, Patrick; Mirdita, Milot
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Reconstructing Ancestral Non-Coding RNAs of Multiple Families Using Sequence and Structural Information with Tree Decomposition
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IF1.6
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deleteHu, Songdi; Reinharz, Vladimir; Tremblay-Savard, Olivier
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Branching-Process Modeling of Homology Distribution in Salmonid Genomes
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IF1.6
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deleteZhang, Yue; Sankoff, David
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Beyond Synteny: A Scalable Phylogenomics Method for Whole-Genome Duplication Detection
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IF1.6
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deleteKalhor, Reza; Lafond, Manuel; Scornavacca, Celine
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PMScanR: An R Package for the Large-Scale Identification, Analysis, and Visualization of Protein Motifs
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IF1.6
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deleteJastrzebski, Jan P.; Gawronska, Monika; Babis, Wiktor; Quaranta, Miriana; Czopek, Damian
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Stability Analysis of Age-Structured Stochastic Delayed Population-Toxicant Model with Lévy Noise
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IF1.6
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deleteDu, Yanyan; Wang, Zong
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Fast Algorithms for Computing Jaro Similarity
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IF1.6
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deleteBasak, Joyanta; Shah, Nidhibahen; Haase, Kenneth; Mathur, Anup; Park, Krista; Steorts, Rebecca; Weinberg, Daniel; Sahni, Sartaj; Rajasekaran, Sanguthevar
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DP-OTG: A Feature-Free Deep Learning Model for Accurate Prediction of Human O-Linked Threonine Glycosylation Sites
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IF1.6
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deleteTran, Thi-Xuan; Le, Nguyen-Quoc-Khanh; Le, Duc-Hau; Nguyen, Van-Nui
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Uncovering Epistatic Interactions in SARS-CoV-2 Evolution Through Hidden Markov Models
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deleteAdeniyi, Ayotomiwa Ezekiel; Juyal, Akshay; Skums, Pavel; Patterson, Murray; Zelikovsky, Alex
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Deep Batch Active Learning for Protein Structure Modeling
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IF1.6
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deleteXue, Zexin; Bailey, Michael; Gupta, Abhinav; Li, Ruijiang; Corrochano-Navarro, Alejandro; Li, Sizhen; Kogler-Anele, Lorenzo; Yu, Qui; Rommelaere, Heidi; Van Breedam, Wander; Furtmann, Norbert; Batchelor, Joseph; Bar-Joseph, Ziv; Jager, Sven
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HyperSBINN: A Hypernetwork-Enhanced Systems Biology-Informed Neural Network for Efficient Drug Cardiosafety Assessment
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deleteSoukarieh, Inass; Hessler, Gerhard; Minoux, Herve; Mohr, Marcel; Schmidt, Friedemann; Wenzel, Jan; Barbillon, Pierre; Gangloff, Hugo; Gloaguen, Pierre
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USTAR-CR: Efficient and Compact Compression of k-Mer Sets Through Colored de Bruijn Graphs
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deleteRossignolo, Enrico; Comin, Matteo
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The Preface
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IF1.6
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deleteSingh, Mona
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Enhancing Clinical Note Generation with ICD-10, Clinical Ontology Knowledge Graphs, and Chain-of-Thought Prompting Using GPT-4
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IF1.6
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deleteMakohon, Ivan; Najafi, Mohamad; Wu, Jian; Brochhausen, Mathias; Li, Yaohang
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