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Genomics Proteomics and Bioinformatics

IF7.9
Papers1458
Citations6045
Journal Papers 1428
Publication Date
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Ocelli: an open-source tool for the analysis and visualization of developmental multimodal single-cell data
deletegenomics proteomics bioinformatics
IF2.8
delete2025-06-01
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deleteOAAI
deleteRutkowski, Piotr; Tabaka, Marcin
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TRanscriptome ANalysis of StratifiEd CohorTs (TRANSECT) enables automated assessment of global gene regulation linked to disparate expression in user defined genes and gene sets
deletegenomics proteomics bioinformatics
IF2.8
delete2025-06-01
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deleteToubia, John; Kusay, Yasir; Maqsood, Muneeza; Warnock, Nicholas, I; Lawrence, David M.; Bracken, Cameron P.; Gregory, Philip A.; Kan, Winnie L.; Selth, Luke A.; Conn, Simon J.; Lopez, Angel F.; Branford, Susan; Scott, Hamish S.; Kok, Chung Hoow; Goodall, Gregory J.; Schreiber, Andreas W.
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Unveiling the structural and functional implications of uncharacterized NSPs and variations in the molecular toolkit across arteriviruses
deletegenomics proteomics bioinformatics
IF2.8
delete2025-06-01
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deleteRakesh, Siuli; Behera, Kshitij; Krishnan, Arunkumar
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Fully haplotyped genome assemblies of healthy individuals reveal variability in 5′ss strength and support by splicing regulatory proteins
deletegenomics proteomics bioinformatics
IF2.8
delete2025-06-01
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PREAI
deletePtok, Johannes; Theiss, Stephan; Schaal, Heiner
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VariantFoldRNA: a flexible, containerized, and scalable pipeline for genome-wide riboSNitch prediction
deletegenomics proteomics bioinformatics
IF2.8
delete2025-05-29
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deleteKirven, Kobie J.; Bevilacqua, Philip C.
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IEIVariantFilter: a bioinformatics tool to speed up genetic diagnosis of inborn errors of immunity patients
deletegenomics proteomics bioinformatics
IF2.8
delete2025-05-28
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deletePereda, Juan; Espinosa, Rafael; Garcia-Solis, Blanca; Guerra-Galan, Teresa; Van-Den-Rym, Ana; Kars, Meltem Ece; Mena, Rocio; Galan, Victor; de Andres-Martin, Ana; Rodriguez-Gallego, Carlos; Lopez-Lera, Alberto; Corvillo, Fernando; Perez-Martinez, Antonio; Lopez-Collazo, Eduardo; Sanchez-Ramon, Silvia; Martinez-Barricarte, Ruben; Quintana-Murci, Lluis; Lorenzo-Salazar, Jose Miguel; Itan, Yuval; Flores, Carlos; Perez-de-Diego, Rebeca
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TCRCluster: a novel approach to T-cell receptor latent featurization and clustering using contrastive learning-guided two-stage variational autoencoders
deletegenomics proteomics bioinformatics
IF2.8
delete2025-05-27
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deleteWan, Yat-Tsai Richie; Nielsen, Morten
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Inferring gene-pathway associations from consolidated transcriptome datasets: an interactive gene network explorer for Tetrahymena thermophila
deletegenomics proteomics bioinformatics
IF2.8
delete2025-05-27
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deleteBertagna, Michael A.; Bright, Lydia J.; Ye, Fei; Jiang, Yu-Yang; Sarkar, Debolina; Pradhan, Ajay; Kumar, Santosh; Gao, Shan; Turkewitz, Aaron P.; Tsypin, Lev M. Z.
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Methyl-Micro-C: simultaneous characterization of chromatin accessibility, interactions, and DNA methylation
deletegenomics proteomics bioinformatics
IF2.8
delete2025-05-27
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deleteGonzalez-Smith, Leonardo; Stevens, Claire; Cao, Huan; Wu, Zexun; Rhie, Suhn K.
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Learning to utilize internal protein 3D nanoenvironment descriptors in predicting CRISPR-Cas9 off-target activity
deletegenomics proteomics bioinformatics
IF2.8
delete2025-05-21
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deleteMak, Jeffrey Kelvin; Bendandi, Artemi; Salim, Jose Augusto; Mazoni, Ivan; de Moraes, Fabio Rogerio; Borro, Luiz; Stoertz, Florian; Rocchia, Walter; Neshich, Goran; Minary, Peter
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CABO-16S-a Combined Archaea, Bacteria, Organelle 16S rRNA database framework for amplicon analysis of prokaryotes and eukaryotes in environmental samples
deletegenomics proteomics bioinformatics
IF2.8
delete2025-05-19
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deleteEitel, Eryn M.; Utter, Daniel R.; Connon, Stephanie A.; Orphan, Victoria J.; Murali, Ranjani
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dsRNAmax: a multi-target chimeric dsRNA designer for safe and effective crop protection
deletegenomics proteomics bioinformatics
IF2.8
delete2025-05-19
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deleteFletcher, Stephen J.; Lawrence, Jai; Sawyer, Anne; Manzie, Narelle; Gardiner, Donald M.; Mitter, Neena; Brosnan, Christopher A.
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DRBP-EDP: classification of DNA-binding proteins and RNA-binding proteins using ESM-2 and dual-path neural network
deletegenomics proteomics bioinformatics
IF2.8
delete2025-05-19
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deleteMu, Qiang; Yu, Guoping; Zhou, Guomin; He, Yubing; Zhang, Jianhua
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Immunopipe: a comprehensive and flexible scRNA-seq and scTCR-seq data analysis pipeline
deletegenomics proteomics bioinformatics
IF2.8
delete2025-05-19
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deleteWang, Panwen; Yu, Yue; Dong, Haidong; Zhang, Shuwen; Sun, Zhifu; Zeng, Hu; Mondello, Patrizia; Kocher, Jean-Pierre A.; Wang, Junwen; Asmann, Yan W.; Lin, Yi; Li, Ying
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ComBat-met: adjusting batch effects in DNA methylation data
deletegenomics proteomics bioinformatics
IF2.8
delete2025-05-19
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deleteWang, Junmin
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Benchmarking of methods that identify alternative polyadenylation events in single-/multiple-polyadenylation site genes
deletegenomics proteomics bioinformatics
IF2.8
delete2025-05-14
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deleteTian, Qiuxiang; Jia, Linpei
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Experience in developing the human genome standard E701
deletegenomics proteomics bioinformatics
IF2.8
delete2025-05-14
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deleteVasiliadis, Iuliia; Belova, Vera; Shmitko, Anna; Kuznetsova, Anna; Samitova, Alina; Suchalko, Oleg; Goltsov, Andrey; Shatalov, Peter; Shegai, Peter; Kulyabina, Elena; Kulyabina, Tatiana; Melkova, Olga; Rebrikov, Denis; Korostin, Dmitriy
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ChEC-seq2: an improved chromatin endogenous cleavage sequencing method and bioinformatic analysis pipeline for mapping in vivo protein-DNA interactions (vol 6, lqae012, 2024)
deletegenomics proteomics bioinformatics
IF2.8
delete2025-05-13
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deleteVanBelzen, Jake; Duan, Chengzhe; Brickner, Donna Garvey; Brickner, Jason H.
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Detecting ribosome collisions with differential rRNA fragment analysis in ribosome profiling data
deletegenomics proteomics bioinformatics
IF2.8
delete2025-05-08
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deleteKyei-Baffour, Edwin Sakyi; Bak, Jitske; Silva, Joana; Faller, William J.; Alkan, Ferhat
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Improving prediction of bacterial sRNA regulatory targets with expression data
deletegenomics proteomics bioinformatics
IF2.8
delete2025-05-08
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deleteDerinkok, Yildiz; Wang, Haiqi
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