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European Bioinformatics Institute (Embl-Ebi)

Scholars52
Papers19
Citations0
Related Papers (19)
Publication Date
Exploring the Terra incognita of AI-based domain classifications
err2025-11-25
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PREAI
errJimin Pei; Antonina Andreeva; Tiago Grego; Sara Chuguransky; Beatriz Lázaro Pinto; Nicole Morvelli Flores; Typhaine Paysan-Lafosse; Richard Dustin Schaeffer; Alex Bateman; Qian Cong; Nick V. Grishin
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Talk2Biomodels: AI agent-based open-source LLM initiative for kinetic biological models
err2025-11-19
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errOAAI
errLilija Wehling; Gurdeep Singh; Ahmad Wisnu Mulyadi; Rakesh Hadne Sreenath; Henning Hermjakob; Tung V. N. Nguyen; Thomas Rückle; Mohammed H. Mosa; Henrik Cordes; Tommaso Andreani; Thomas Klabunde; Rahuman S. Malik Sheriff; Douglas McCloskey
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BioContextAI is a community hub for agentic biomedical systems
err2025-11-06
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PREAI
errMalte Kuehl; Darius P. Schaub; Francesco Carli; Lukas Heumos; Malte Hellmig; Camila Fernández-Zapata; Nico Kaiser; Jonathan Schaul; Anton Kulaga; Nikolay Usanov; Christian F. Krebs; Ulf Panzer; Stefan Bonn; Sebastian Lobentanzer; Julio Saez-Rodriguez; Victor G. Puelles
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A cross-study transcriptional patient map of heart failure defines conserved multicellular coordination in cardiac remodeling
err2025-10-31
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errOAAI
errJan D. Lanzer; Ricardo O. Ramirez Flores; José Liñares Blanco; Marco Steier; Ashraf Y. Rangrez; Norbert Frey; Julio Saez-Rodriguez
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Origins of chromosome instability unveiled by coupled imaging and genomics
errNature
IF48.5
err2025-10-29
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errOAAI
errMarco Raffaele Cosenza; Alice Gaiatto; Büşra Erarslan Uysal; Álvaro Andrades; Nina Luisa Sautter; Marina Simunovic; Michael Adrian Jendrusch; Sonia Zumalave; Tobias Rausch; Aliaksandr Halavatyi; Eva-Maria Geissen; Joshua Lucas Eigenmann; Thomas Weber; Patrick Hasenfeld; Eva Benito; Catherine Stober; Isidro Cortes-Ciriano; Andreas E. Kulozik; Rainer Pepperkok; Jan O. Korbel
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Quantitative systems toxicology: modelling to mechanistically understand and predict drug safety
err2025-10-27
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PREAI
errChristopher E. Goldring; Giusy Russomanno; Carmen Pin; Panuwat Trairatphisan; Kylie A. Beattie; Ciarán P. Fisher; Janet Piñero; Richard J. Brennan; Diana Clausznitzer; Ian M. Copple; Theo M. de Kok; Carrie A. Duckworth; Laura I. Furlong; Barbara Füzi; Attila Gabor; Louis Gall; Jan Hengstler; Henning Hermjakob; Fiona Hunter; Danyel Jennen; Mikko Koskinen; Steven J. Kunnen; Lieve Lammens; Sebastian Lobentanzer; Marcel Mohr; Elisa Passini; D. Mark Pritchard; Rahuman S. Malik-Sheriff; Blanca Rodríguez; Eric I. Rossman; Julio Saez-Rodríguez; Friedemann Schmidt; Rowena Sison-Young; Inari Soininen; Sean Turner; Bob van de Water; Johan G. C. van Hasselt; Filippo Venezia; Jeffrey A. Willy; Derek J. Leishman; James L. Stevens; Loic Laplanche
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Deadly Innovations: Molecular phylogenetics and evolution of phospholipases A2 toxins in viperid snake venoms
err2025-10-18
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PREAI
errLorenzo Seneci; Vivek Suranse; Marco Mancuso; Tobias Senoner; Bing Xie; Ivan Koludarov; Kartik Sunagar; Bryan G. Fry
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Chemical classification program synthesis using generative artificial intelligence
err2025-10-04
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errOAAI
errChristopher J. Mungall; Adnan Malik; Daniel R. Korn; Justin T. Reese; Noel M. O’Boyle; Janna Hastings
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Updates to the CASP Infrastructure in 2024
err2025-09-01
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errOAAI
errAndriy Kryshtafovych; Maciej Milostan; Marc F. Lensink; Sameer Velankar; Alexandre M. J. J. Bonvin; John Moult; Krzysztof Fidelis
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A bacterial and viral genome catalogue from Atlantic salmon highlights diverse gut microbiome compositions at pre- and post-smolt life stages
err2025-08-13
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PREAI
errVarsha Kale; Germana Baldi; Martin Beracochea; Cecilie Clausen; Alejandra Escobar-Zepeda; Sabina Leanti La Rosa; Laurène A. Lecaudey; Sen Li; Sarah S. T. Mak; Michael D. Martin; Garazi Martin Bideguren; Louisa A. Pless; Jacob A. Rasmussen; Alexander B. Rogers; Harald Sveier; Arturo Vera-Ponce de León; Ana Verissimo; M. Thomas P. Gilbert; Lorna Richardson; Morten T. Limborg; Robert D. Finn
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Biomolecular Interaction Prediction in the Pre- and Post-AlphaFold Era: The 8th CAPRI Evaluation
err2025-07-14
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errOAAI
errMarc F. Lensink; Nessim Raouraoua; Guillaume Brysbaert; Sameer Velankar; Shoshana J. Wodak; Alexandre M. J. J. Bonvin
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Pigmentation and Retinal Pigment Epithelium Thickness: A Study of the Phenotypic and Genotypic Relationships Between Ocular and Extraocular Pigmented Tissues
err2025-07-12
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errOAAI
errThomas H Julian; Tomas Fitzgerald; UK Biobank Eye and Vision Consortium; Ewan Birney; Panagiotis I. Sergouniotis
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CryoRhodopsins: A comprehensive characterization of a group of microbial rhodopsins from cold environments
err2025-07-04
err0
errOAAI
errGerrit H. U. Lamm; Egor Marin; Alexey Alekseev; Anna V. Schellbach; Artem Stetsenko; Jose Manuel Haro-Moreno; Gleb Bourenkov; Valentin Borshchevskiy; Marvin Asido; Michael Agthe; Sylvain Engilberge; Samuel L. Rose; Nicolas Caramello; Antoine Royant; Thomas R. Schneider; Alex Bateman; Thomas Mager; Tobias Moser; Francisco Rodriguez-Valera; Josef Wachtveitl; Albert Guskov; Kirill Kovalev
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Pseudonatural Products for Chemical Biology and Drug Discovery
err2025-07-01
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errOAAI
errLuca C. Greiner; Axel Pahl; A. Lina Heinzke; Barbara Zdrazil; Andrew R. Leach; Robert J. Young; Paul D. Leeson; Herbert Waldmann
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Genetic mapping and validation of QTL for whitefly resistance in cassava (Manihot esculenta Crantz)
err2025-06-24
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errOAAI
errAdriana Bohorquez-Chaux; Luis Augusto Becerra Lopez-Lavalle; Vianey Barrera-Enriquez; María Isabel Gómez-Jiménez; Camilo E. Sanchez-Sarria; Luis Fernando Delgado; Xiaofei Zhang; Winnie Gimode
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Growth vs Diversity: A Time-Evolution Analysis of the Chemical Space
err2025-06-13
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errOAAI
errKenneth Lopez Perez; Edgar López-López; Flavie Soulage; Eloy Felix; José L. Medina-Franco; Ramon Alain Miranda-Quintana
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Methods of causal effect estimation for high-dimensional treatments: A radiotherapy simulation study
err2025-06-02
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errOAAI
errAlexander Jenkins; Eliana Vasquez Osorio; Andrew Green; Marcel van Herk; Matthew Sperrin; Alan McWilliam
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Evaluation of PE5 Entries on the Human Proteome Project Target List
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err0
PREAI
errClarissa Zheng; Marie Andken; Jonathan M. Mudge; Michele Magrane; Sandra Orchard; Zhi Sun; Eric W. Deutsch
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Drug and Clinical Candidate Drug Data in ChEMBL
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err0
errOAAI
errFiona M. I. Hunter; Harris Ioannidis; A. Patrícia Bento; Nicolas Bosc; Sybilla Corbett; Eloy Felix; M. Paula Magarinos; Emma Manners; Ines A. Smit; Marleen de Veij; Noel M. O’Boyle; Barbara Zdrazil; Andrew R. Leach
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