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Avi Srivastava

New York University

24H-index
66Paper Count
2.5WCitation Count
Published Papers 9
Publication Date
Dictionary learning for integrative, multimodal and scalable single-cell analysis
err2023-05-25
err395
errOAAI
errHao, Yuhan; Stuart, Tim; Kowalski, Madeline H. H.; Choudhary, Saket; Hoffman, Paul; Hartman, Austin; Srivastava, Avi; Molla, Gesmira; Madad, Shaista; Fernandez-Granda, Carlos; Satija, Rahul
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Characterizing cellular heterogeneity in chromatin state with scCUT&Tag-pro
err2022-03-24
err59
errOAAI
errZhang, Bingjie; Srivastava, Avi; Mimitou, Eleni; Stuart, Tim; Raimondi, Ivan; Hao, Yuhan; Smibert, Peter; Satija, Rahul
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Alevin-fry unlocks rapid, accurate and memory-frugal quantification of single-cell RNA-seq data
err2022-03-11
err36
errOAAI
errHe, Dongze; Zakeri, Mohsen; Sarkar, Hirak; Soneson, Charlotte; Srivastava, Avi; Patro, Rob
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Single-cell chromatin state analysis with Signac (vol 18, pg 1333, 2021)
err2022-01-07
err5
errOAAI
errStuart, Tim; Srivastava, Avi; Madad, Shaista; Lareau, Caleb A.; Satija, Rahul
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Single-cell chromatin state analysis with Signac
err2021-11-01
err594
errOAAI
errStuart, Tim; Srivastava, Avi; Madad, Shaista; Lareau, Caleb A.; Satija, Rahul
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Preprocessing choices affect RNA velocity results for droplet scRNA-seq data
err2021-01-11
err29
errOAAI
errSoneson, Charlotte; Srivastava, Avi; Patro, Rob; Stadler, Michael B.
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Alignment and mapping methodology influence transcript abundance estimation
err2020-09-07
err74
errOAAI
errSrivastava, Avi; Malik, Laraib; Sarkar, Hirak; Zakeri, Mohsen; Almodaresi, Fatemeh; Soneson, Charlotte; Love, Michael I.; Kingsford, Carl; Patro, Rob
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Nonparametric expression analysis using inferential replicate counts
err2019-08-02
err54
errOAAI
errZhu, Anqi; Srivastava, Avi; Ibrahim, Joseph G.; Patro, Rob; Love, Michael, I
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Alevin efficiently estimates accurate gene abundances from dscRNA-seq data
err2019-03-27
err150
errOAAI
errSrivastava, Avi; Malik, Laraib; Smith, Tom; Sudbery, Ian; Patro, Rob
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