Not logged in The IGVF catalog-from genetic variation to function Li, Daofeng; Liu, Shane; Assis, Pedro R.; Li, Mingjie; Dong, Shengcheng; Whaling, Ian; Jolanki, Otto; Kagda, Meenakshi; Zhang, Wenjin; Macias-Velasco, Juan F.; Liu, Tianjie; Cody, Sarah; Antonacci-Fulton, Lucinda; Huang, Yuanhao; Liu, Jie; Montgomery, Michael T.; Zeiberg, Daniel; Jain, Shantanu; Pejaver, Vikas; Bergquist, Timothy; Chen, Yile; Radivojac, Predrag; Gersbach, Charles A.; Sherpa, Rintsen N.; Castro, Christopher P.; Boyle, Alan P.; Starita, Lea M.; Fowler, Douglas M.; Ahituv, Nadav; Dey, Kushal K.; Majoros, William H.; Reddy, Timothy E.; Craven, Mark; Sinha, Riya; Sverchkov, Yuriy; Cai, Xiangmeng; Nzima, Mpathi Z.; Calderwood, Michael A.; Rozowsky, Joel; Gerstein, Mark; Ma, Jian; Yue, Feng; Cherry, J. Michael; Love, Michael, I; Engreitz, Jesse M.; Hitz, Benjamin C.; Wang, Ting Share Save
More than bad luck: Cancer and aging are linked to replication-driven changes to the epigenome Minteer, Christopher J.; Thrush, Kyra; Gonzalez, John; Niimi, Peter; Rozenblit, Mariya; Rozowsky, Joel; Liu, Jason; Frank, Mor; McCabe, Thomas; Higgins-Chen, Albert T.; Hofstatter, Erin; Pusztai, Lajos; Beckman, Kenneth; Gerstein, Mark; Levine, Morgan E. Share Save
exRNA-eCLIP intersection analysis reveals a map of extracellular RNA binding proteins and associated RNAs across major human biofluids and carriers Laplante, Emily L.; Sturchler, Alessandra; Fullem, Robert; Chen, David; Starner, Anne C.; Esquivel, Emmanuel; Alsop, Eric; Jackson, Andrew R.; Ghiran, Ionita; Pereira, Getulio; Rozowsky, Joel; Chang, Justin; Gerstein, Mark B.; Alexander, Roger P.; Roth, Matthew E.; Franklin, Jeffrey L.; Coffey, Robert J.; Raffai, Robert L.; Mansuy, Isabelle M.; Stavrakis, Stavros; Demello, Andrew J.; Laurent, Louise C.; Wang, Yi-Ting; Tsai, Chia-Feng; Liu, Tao; Jones, Jennifer; Van Keuren-Jensen, Kendall; Van Nostrand, Eric; Mateescu, Bogdan; Milosavljevic, Aleksandar Share Save
Revisiting the bad luck hypothesis: Cancer risk and aging are linked to replication-driven changes to the epigenome Minteer, Christopher J.; Thrush, Kyra; Niimi, Peter; Rozowsky, Joel; Liu, Jason; Frank, Mor; McCabe, Thomas; Hofstatter, Erin; Rozenblit, Mariya; Pusztai, Lajos; Beckman, Kenneth; Gerstein, Mark; Levine, Morgan E. Share Save
Supervised enhancer prediction with epigenetic pattern recognition and targeted validation Sethi, Anurag; Gu, Mengting; Gumusgoz, Emrah; Chan, Landon; Yan, Koon-Kiu; Rozowsky, Joel; Barozzi, Iros; Afzal, Veena; Akiyama, Jennifer A.; Plajzer-Frick, Ingrid; Yan, Chengfei; Novak, Catherine S.; Kato, Momoe; Garvin, Tyler H.; Pham, Quan; Harrington, Anne; Mannion, Brandon J.; Lee, Elizabeth A.; Fukuda-Yuzawa, Yoko; Visel, Axel; Dickel, Diane E.; Yip, Kevin Y.; Sutton, Richard; Pennacchio, Len A.; Gerstein, Mark Share Save
An integrative ENCODE resource for cancer genomics Zhang, Jing; Lee, Donghoon; Dhiman, Vineet; Jiang, Peng; Xu, Jie; McGillivray, Patrick; Yang, Hongbo; Liu, Jason; Meyerson, William; Clarke, Declan; Gu, Mengting; Li, Shantao; Lou, Shaoke; Xu, Jinrui; Lochovsky, Lucas; Ung, Matthew; Ma, Lijia; Yu, Shan; Cao, Qin; Harmanci, Arif; Yan, Koon-Kiu; Sethi, Anurag; Gursoy, Gamze; Schoenberg, Michael Rutenberg; Rozowsky, Joel; Warrell, Jonathan; Emani, Prashant; Yang, Yucheng T.; Galeev, Timur; Kong, Xiangmeng; Liu, Shuang; Li, Xiaotong; Krishnan, Jayanth; Feng, Yanlin; Rivera-Mulia, Juan Carlos; Adrian, Jessica; Broach, James R.; Bolt, Michael; Moran, Jennifer; Fitzgerald, Dominic; Dileep, Vishnu; Liu, Tingting; Mei, Shenglin; Sasaki, Takayo; Trevilla-Garcia, Claudia; Wang, Su; Wang, Yanli; Zang, Chongzhi; Wang, Daifeng; Klein, Robert J.; Snyder, Michael; Gilbert, David M.; Yip, Kevin; Cheng, Chao; Yue, Feng; Liu, X. Shirley; White, Kevin P.; Gerstein, Mark Share Save
exceRpt: A Comprehensive Analytic Platform for Extracellular RNA Profiling Rozowsky, Joel; Kitchen, Robert R.; Park, Jonathan J.; Galeev, Timur R.; Diao, James; Warrell, Jonathan; Thistlethwaite, William; Subramanian, Sai L.; Milosavljevic, Aleksandar; Gerstein, Mark Share Save
Isoform-Level Interpretation of High-Throughput Proteomics Data Enabled by Deep Integration with RNA-seq Carlyle, Becky C.; Kitchen, Robert R.; Zhang, Jing; Wilson, Rashaun S.; Lam, Tukiet T.; Rozowsky, Joel S.; Williams, Kenneth R.; Sestan, Nenad; Gerstein, Mark B.; Nairn, Angus C. Share Save
Evaluation of commercially available small RNASeq library preparation kits using low input RNA Yeri, Ashish; Courtright, Amanda; Danielson, Kirsty; Hutchins, Elizabeth; Alsop, Eric; Carlson, Elizabeth; Hsieh, Michael; Ziegler, Olivia; Das, Avash; Shah, Ravi, V; Rozowsky, Joel; Das, Saumya; Van Keuren-Jensen, Kendall Share Save
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Stroke and Circulating Extracellular RNAs Mick, Eric; Shah, Ravi; Tanriverdi, Kahraman; Murthy, Venkatesh; Gerstein, Mark; Rozowsky, Joel; Kitchen, Robert; Larson, Martin G.; Levy, Daniel; Freedman, Jane E. Share Save
Total Extracellular Small RNA Profiles from Plasma, Saliva, and Urine of Healthy Subjects Yeri, Ashish; Courtright, Amanda; Reiman, Rebecca; Carlson, Elizabeth; Beecroft, Taylor; Janss, Alex; Siniard, Ashley; Richholt, Ryan; Balak, Chris; Rozowsky, Joel; Kitchen, Robert; Hutchins, Elizabeth; Winarta, Joseph; Mccoy, Roger; Anastasi, Matthew; Kim, Seungchan; Huentelman, Matthew; Van Keuren-Jensen, Kendall Share Save
Diverse human extracellular RNAs are widely detected in human plasma (vol 7, 11106, 2016) Freedman, Jane E.; Gerstein, Mark; Mick, Eric; Rozowsky, Joel; Levy, Daniel; Kitchen, Robert; Das, Saumya; Shah, Ravi; Danielson, Kirsty; Beaulieu, Lea; Navarro, Fabio C. P.; Wang, Yaoyu; Galeev, Timur R.; Holman, Alex; Kwong, Raymond Y.; Murthy, Venkatesh; Tanriverdi, Selim E.; Koupenova, Milka; Mikhalev, Ekaterina; Tanriverdi, Kahraman Share Save
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The real cost of sequencing: scaling computation to keep pace with data generation (vol 17, 53, 2016) Muir, Paul; Li, Shantao; Lou, Shaoke; Wang, Daifeng; Spakowicz, Daniel J.; Salichos, Leonidas; Zhang, Jing; Weinstock, George M.; Isaacs, Farren; Rozowsky, Joel; Gerstein, Mark Share Save
Diverse human extracellular RNAs are widely detected in human plasma Freedman, Jane E.; Gerstein, Mark; Mick, Eric; Rozowsky, Joel; Levy, Daniel; Kitchen, Robert; Das, Saumya; Shah, Ravi; Danielson, Kirsty; Beaulieu, Lea; Navarro, Fabio C. P.; Wang, Yaoyu; Galeev, Timur R.; Holman, Alex; Kwong, Raymond Y.; Murthy, Venkatesh; Tanriverdi, Selim E.; Koupenova-Zamor, Milka; Mikhalev, Ekaterina; Tanriverdi, Kahraman Share Save
A uniform survey of allele-specific binding and expression over 1000-Genomes-Project individuals Chen, Jieming; Rozowsky, Joel; Galeev, Timur R.; Harmanci, Arif; Kitchen, Robert; Bedford, Jason; Abyzov, Alexej; Kong, Yong; Regan, Lynne; Gerstein, Mark Share Save
The real cost of sequencing: scaling computation to keep pace with data generation Muir, Paul; Li, Shantao; Lou, Shaoke; Wang, Daifeng; Spakowicz, Daniel J.; Salichos, Leonidas; Zhang, Jing; Weinstock, George M.; Isaacs, Farren; Rozowsky, Joel; Gerstein, Mark Share Save
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