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Robert B. Scharpf

johns hopkins university

38H-index
368Paper Count
1.5WCitation Count
Published Papers 63
Publication Date
Cell-free DNA fragmentomes for noninvasive detection of liver cirrhosis and other diseases
err2026-03-04
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PREAI
errAkshaya V. Annapragada; Zachariah H. Foda; Hope Orjuela; Carter Norton; Shashikant Koul; Noushin Niknafs; Sarah Short; Keerti Boyapati; Adrianna Bartolomucci; Dimitrios Mathios; Michael Noë; Chris Cherry; Jacob Carey; Alessandro Leal; Bryan Chesnick; Nicholas C. Dracopoli; Jamie E. Medina; Nicholas A. Vulpescu; Daniel C. Bruhm; Sarah Bacus; Vilmos Adleff; Amy K. Kim; Stephen B. Baylin; Gregory D. Kirk; Andrei Sorop; Razvan Iacob; Speranta Iacob; Liana Gheorghe; Simona Dima; Manuel Ramírez-Zea; Katherine A. McGlynn; Claus L. Feltoft; Julia S. Johansen; John Groopman; Jillian Phallen; Robert B. Scharpf; Victor E. Velculescu
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NONINVASIVE DETECTION OF GLIOMAS VIA PLASMA CFDNA FRAGMENTOME PROFILING
err2025-11-01
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errOAAI
errMathios, Dimitrios; Niknafs, Noushin; Annapragada, Akshaya; Bobeff, Ernest; Park, Chul-Kee; Lim, Michael; Jackson, Christopher; Phallen, Jillian; Scharpf, Robert; Velculescu, Victor
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Genome-wide analyses of cell-free DNA for therapeutic monitoring of patients with pancreatic cancer
err2025-05-23
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PREAI
errHruban, Carolyn; Bruhm, Daniel C.; Chen, Inna M.; Koul, Shashikant; Annapragada, Akshaya V.; Vulpescu, Nicholas A.; Short, Sarah; Theile, Susann; Boyapati, Kavya; Alipanahi, Bahar; Skidmore, Zachary L.; Leal, Alessandro; Cristiano, Stephen; Adleff, Vilmos; Johannsen, Julia S.; Scharpf, Robert B.; Foda, Zachariah H.; Phallen, Jillian; Velculescu, Victor E.
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Genomic and fragmentomic landscapes of cell-free DNA for early cancer detection
err2025-03-04
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PREAI
errBruhm, Daniel C.; Vulpescu, Nicholas A.; Foda, Zachariah H.; Phallen, Jillian; Scharpf, Robert B.; Velculescu, Victor E.
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Tumor immune microenvironment alterations associated with progression in human intraductal papillary mucinous neoplasms
err2025-02-25
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PREAI
errJamouss, Kevin T.; Damanakis, Alexander Ioannis; Cornwell, Abigail C.; Jongepier, Martine; Trujillo, Maria A.; Pfluger, Michael Johannes; Kawalerski, Ryan; Maalouf, Alexandre; Hirose, Katsuya; Datta, Shalini; Sipes, Abigail; Pedro, Brian A.; Gudmundsson, Emma; Assarzadegan, Naziheh; Engle, Logan; Scharpf, Robert B.; Kawamoto, Satomi; Thompson, Elizabeth D.; Wood, Laura D.
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DNA methylation and gene expression as determinants of genome-wide cell-free DNA fragmentation
err2024-08-06
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errOAAI
errNoe, Michael; Mathios, Dimitrios; Annapragada, Akshaya V.; Koul, Shashikant; Foda, Zacharia H.; Medina, Jamie E.; Cristiano, Stephen; Cherry, Christopher; Bruhm, Daniel C.; Niknafs, Noushin; Adleff, Vilmos; Ferreira, Leonardo; Easwaran, Hari; Baylin, Stephen; Phallen, Jillian; Scharpf, Robert B.; Velculescu, Victor E.
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CRISPR-Cas9 for selective targeting of somatic mutations in pancreatic cancers
err2024-06-19
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errOAAI
errTeh, Selina Shiqing K.; Bowland, Kirsten; Halper-Stromberg, Eitan; Kotwal, Akhil; Bennett, Alexis; Skaist, Alyza; Tang, Jacqueline; Cai, Fidel; Macoretta, Antonella; Liang, Hong; Kamiyama, Hirohiko; Wheelan, Sarah; Lin, Ming-Tseh; Hruban, Ralph H.; Hung, Chien-Fu; Goldstein, Michael; Scharpf, Robert B.; Roberts, Nicholas J.; Eshleman, James R.
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Clinical Validation of a Cell-Free DNA Fragmentome Assay for Augmentation of Lung Cancer Early Detection
err2024-06-06
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errOAAI
errMazzone, Peter J.; Bach, Peter B.; Carey, Jacob; Schonewolf, Caitlin A.; Bognar, Katalin; Ahluwalia, Manmeet S.; Cruz-Correa, Marcia; Gierada, David; Kotagiri, Sonali; Lloyd, Kathryn; Maldonado, Fabien; Ortendahl, Jesse D.; Sequist, Lecia V.; Silvestri, Gerard A.; Tanner, Nichole; Thompson, Jeffrey C.; Vachani, Anil; Wong, Kwok-Kin; Zaidi, Ali H.; Catallini, Joseph; Gershman, Ariel; Lumbard, Keith; Millberg, Laurel K.; Nawrocki, Jeff; Portwood, Carter; Rangnekar, Aakanksha; Sheridan, Carolina Campos; Trivedi, Niti; Wu, Tony; Zong, Yuhua; Cotton, Lindsey; Ryan, Allison; Cisar, Christopher; Leal, Alessandro; Dracopoli, Nicholas; Scharpf, Robert B.; Velculescu, Victor E.; Pike, Luke R. G.
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PLASMUT: An R Package for estimating the probability of tumor-specific mutations in cell-free DNA
err2024-03-22
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PREAI
errArun, Adith S.; Medina, Jamie E.; Cristiano, Stephen; Bruhm, Daniel C.; Fijneman, Remond J.; Meijer, Gerrit A.; Leal, Alessandro; Velculescu, Victor E.; Scharpf, Robert B.
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DNA methylation and gene expression as determinants of genome-wide cell-free DNA fragmentation
err2024-03-22
err0
PREAI
errNoe, Michael; Annapragada, Akshaya V.; Foda, Zachariah H.; Medina, Jamie E.; Mathios, Dimitrios; Cristiano, Stephen; Cherry, Christopher; Bruhm, Daniel C.; Niknafs, Noushin; Adleff, Vilmos; Ferreira, Leonardo; Easwaran, Hari; Baylin, Stephen; Phallen, Jillian; Scharpf, Robert B.; Velculescu, Victor E.
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Liquid biopsy approaches for monitoring metastatic pancreatic cancer in immunotherapy treated patients
err2024-03-22
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PREAI
errHruban, Carolyn Anna; Chen, Inna; Bruhm, Daniel C.; Koul, Shashikant; Yao, Jennie; Theile, Susann; Boyapati, Kavya; Vulpescu, Nicholas A.; Annapragada, Akshaya; Ferreira, Leonardo; Cristiano, Stephen; Foda, Zachariah H.; Adleff, Vilmos; Johansen, Julia; Phallen, Jillian; Scharpf, Robert B.; Velculescu, Victor E.
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Genome-wide repeat landscapes in cancer and cell-free DNA
err2024-03-22
err0
PREAI
errAnnapragada, Akshaya; Niknafs, Noushin; White, James R.; Bruhm, Daniel C.; Cherry, Christopher; Medina, Jamie E.; Adleff, Vilmos; Hruban, Carolyn; Mathios, Dimitrios; Foda, Zachariah H.; Phallen, Jillian; Scharpf, Robert B.; Velculescu, Victor E.
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Chromatin landscapes of colorectal cancer development and cfDNA fragmentation
err2024-03-22
err0
PREAI
errVulpescu, Nicholas A.; Foda, Zachariah H.; Wisse, Pieter H.; Medina, Jamie E.; Adleff, Vilmos; Fijneman, Remond J.; Scharpf, Robert B.; Meijer, Gerrit A.; Carvalho, Beatriz; Velculescu, Victor E.
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Robustness of fragmentation-based cell-free DNA approaches to clonal hematopoiesis
err2024-03-22
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PREAI
errCristiano, Stephen; Alipanahi, Bahar; Medina, Jamie E.; Rinaldi, Lorenzo; Dracopoli, Nicholas; Scharpf, Robert B.; Leal, Alessandro; Velculescu, Victor E.; Tom, Jennifer
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Variation of cell-free DNA concentrations in liquid biopsies
err2024-03-22
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PREAI
errShort, Sarah; Annapragada, Akshaya V.; Medina, Jamie E.; Foda, Zachariah H.; Mathios, Dimitrios; Hruban, Carolyn; Chiao, Elaine J.; Boyapati, Kavya; Bartolomucci, Adrianna; Boyapati, Keerti; Adleff, Vilmos; Scharpf, Robert B.; Velculescu, Victor E.; Phallen, Jillian
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Monitoring response to immunotherapy using cell free DNA fragmentomes
err2024-03-22
err0
PREAI
errAlipanahi, Bahar; Sivapalan, Lavanya; Medina, Jamie; Skidmore, Zachary L.; Ghanem, Paola; Peters, Erica; Pereira, Gavin; Rao, Nisha; Velliangiri, Kavya; Konicki, Alissa; Cristiano, Stephen; Millberg, Laurel; Carey, Jacob; Lumbard, Keith; Niknafs, Noushin; Chesnick, Bryan; Tom, Jennifer; Leal, Alessandro; Levy, Benjamin; Forde, Patrick; Bach, Peter; Dracopoli, Nicholas C.; Scharpf, Robert B.; Velculescu, Victor; Rinaldi, Lorenzo; Anagnostou, Valsamo
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Genome-wide repeat landscapes in cancer and cell-free DNA
err2024-03-13
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errOAAI
errAnnapragada, Akshaya V.; Niknafs, Noushin; White, James R.; Bruhm, Daniel C.; Cherry, Christopher; Medina, Jamie E.; Adleff, Vilmos; Hruban, Carolyn; Mathios, Dimitrios; Foda, Zachariah H.; Phallen, Jillian; Scharpf, Robert B.; Velculescu, Victor E.
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Novel PAMs from somatic mutations produce numerous pancreatic cancer-specific CRISPR-Cas9 targets for selective cell elimination: A novel gene therapy approach for cancer
err2023-12-01
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PREAI
errTeh, Selina Shiqing K.; Bowland, Kirsten; Bennett, Alexis; Halper-Stromberg, Eitan; Skaist, Alyza; Pallavajjala, Aparna; Tang, Jacqueline; Cai, Fidel; Liang, Hong; Wheelan, Sarah; Scharpf, Robert B.; Roberts, Nicholas J.; Eshleman, James R.
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Cell-Free DNA Fragmentomes in the Diagnostic Evaluation of Patients With Symptoms Suggestive of Lung Cancer
errCHEST
IF8.6
err2023-10-01
err5
errOAAI
errLeal, Alessandro I. C.; Mathios, Dimitrios; Jakubowski, Debbie; Johansen, Jakob S.; Lau, Anna; Wu, Tony; Cristiano, Stephen; Medina, Jamie E.; Phallen, Jillian; Bruhm, Daniel C.; Carey, Jacob; Dracopoli, Nicholas C.; Bojesen, Stig E.; Scharpf, Robert B.; Velculescu, Victor E.; Vachani, Anil; Bach, Peter B.
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PROSPECTIVE EVALUATION OF CELL-FREE DNA FRAGMENTATION PROFILES FOR LUNG CANCER DETECTION
errCHEST
IF8.6
err2023-10-01
err0
errOAAI
errMazzone, Peter J.; Wong, Kwok-Kin; Tsay, James; Vachani, Anil; Thompson, Jeffrey; Ryan, Allison; Carey, Jacob; Wu, Tony; Zong, Yuhua; Portwood, Carter; Lumbard, Keith; Catallini, Joseph; Arjungi, Kavita; Birch, Ashley; Bach, Peter; Scharpf, Robert; Dracopoli, Nicholas; Velculescu, Victor E.
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