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J

Joanna L. Kelley

department of ecology and evolutionary biology

40H-index
182Paper Count
8.5KCitation Count
Published Papers 70
Publication Date
Ecotype-associated structural variants across multiple locally adapted Poeciliid fishes
err2026-08-01
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errOAAI
errKara Ryan; Rishi De-Kayne; Lenin Arias-Rodriguez; Michael Tobler; Joanna L. Kelley
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Tissue-Specific Plasticity of DNA Methylation Across Intertidal Microhabitats in Juvenile Mussels (Mytilus californianus)
err2026-06-04
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errOAAI
errQiting Cai; Samuel N. Bogan; Richelle L. Tanner; Joanna L. Kelley; W. Wesley Dowd
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Editorial 2026
err2025-12-31
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errOAAI
errBenjamin Sibbett; Joanna Freeland; Joanna L. Kelley; Alana Alexander
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Chromosome-scale Genomes Show Rapid Diversification and Ancient Gene Flow Among Bear Species
err2025-11-01
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errOAAI
errWooldridge, T. Brock; Escalona, Merly; Perry, Blair W.; Enstrom, Alexis N.; Salih, Dalya; Seligmann, William E.; Sacco, Samuel; Moon, Katherine L.; Sahasrabudhe, Ruta; Chumchim, Noravit; Nguyen, Oanh; Kelley, Joanna L.; MacPhee, Ross D. E.; Shapiro, Beth
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Temperature and Pressure Shaped the Evolution of Antifreeze Proteins in Polar and Deep Sea Zoarcoid Fishes
err2025-10-01
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PREAI
errBogan, Samuel N.; Surendran, Nathan; Hotaling, Scott; Desvignes, Thomas; Bista, Iliana; Lins, Luana S. F.; Eilertsen, Mari H.; Le Francois, Nathalie R.; Algayer, Tait; Hamilton, Scott L.; Frandsen, Paul B.; Hoffmann, Federico G.; Kelley, Joanna L.
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Embryonic thermal environments drive plasticity in gene expression
err2025-06-10
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errOAAI
errAnthony A. Snead; Corey R. Quackenbush; Shawn Trojahn; Anna L. McDonald; Luana S.F. Lins; Chris Cornelius; Paula E. Adams; Dengke Ma; Yuying Hsu; Eric Haag; Frédéric Silvestre; Akira Kanamori; Ryan L. Earley; Joanna L. Kelley
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New Genome Assemblies for Poeciliidae: A Foundation for Adaptation Studies
err2025-06-01
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errOAAI
errRyan, Kara; De-Kayne, Rishi; Davis, Jeremy; Arias-Rodriguez, Lenin; Tobler, Michael; Kelley, Joanna L.
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Phylogenetic Signal in Primate Tooth Enamel Proteins and its Relevance for Paleoproteomics
err2025-01-21
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errOAAI
errFong-Zazueta, Ricardo; Krueger, Johanna; Alba, David M.; Aymerich, Xenia; Beck, Robin M. D.; Cappellini, Enrico; Carrillo-Martin, Guillermo; Cirilli, Omar; Clark, Nathan; Cornejo, Omar E.; Farh, Kyle Kai-How; Ferrandez-Peral, Luis; Juan, David; Kelley, Joanna L.; Kuderna, Lukas F. K.; Little, Jordan; Orkin, Joseph D.; Paterson, Ryan S.; Pawar, Harvinder; Marques-Bonet, Tomas; Lizano, Esther
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Editorial 2025
err2024-12-14
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PREAI
errNarum, Shawn; Kelley, Joanna; Sibbett, Ben
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Gene expression signatures between Limia perugiae (Poeciliidae) populations from freshwater and hypersaline habitats, with comparisons to other teleosts
err2024-12-05
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errOAAI
errWilson, Elizabeth J.; Barts, Nick; Coffin, John L.; Johnson, James B.; Rodriguez Pena, Carlos M.; Kelley, Joanna L.; Greenway, Ryan
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A Pipeline and Recommendations for Population and Individual Diagnostic SNP Selection in Non-Model Species
err2024-11-29
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errArmstrong, Ellie E.; Li, Chenyang; Campana, Michael G.; Ferrari, Tessa; Kelley, Joanna L.; Petrov, Dmitri A.; Solari, Katherine A.; Mooney, Jazlyn A.
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Integrative analyses of convergent adaptation in sympatric extremophile fishes
err2024-11-01
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PREAI
errGreenway, Ryan; De-Kayne, Rishi; Brown, Anthony P.; Camarillo, Henry; Delich, Cassandra; McGowan, Kerry L.; Nelson, Joel; Arias-Rodriguez, Lenin; Kelley, Joanna L.; Tobler, Michael
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Whole genomes of Amazonian uakari monkeys reveal complex connectivity and fast differentiation driven by high environmental dynamism
err2024-10-08
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errOAAI
errHermosilla-Albala, Nuria; Silva, Felipe Ennes; Cuadros-Espinoza, Sebastian; Fontsere, Claudia; Valenzuela-Seba, Alejandro; Pawar, Harvinder; Gut, Marta; Kelley, Joanna L.; Ruibal-Puertas, Sandra; Alentorn-Moron, Pol; Faella, Armida; Lizano, Esther; Farias, Izeni; Hrbek, Tomas; Valsecchi, Joao; Gut, Ivo G.; Rogers, Jeffrey; Farh, Kyle Kai-How; Kuderna, Lukas F. K.; Marques-Bonet, Tomas; Boubli, Jean P.
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Nascent transcription reveals regulatory changes in extremophile fishes inhabiting hydrogen sulfide-rich environments
err2024-06-19
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errOAAI
errPerry, Blair W.; McGowan, Kerry L.; Arias-Rodriguez, Lenin; Duttke, Sascha H.; Tobler, Michael; Kelley, Joanna L.
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Evolutionary Rate Shifts in Coding and Regulatory Regions Underpin Repeated Adaptation to Sulfidic Streams in Poeciliid Fishes
err2024-05-24
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errOAAI
errDe-Kayne, Rishi; Perry, Blair W.; Mcgowan, Kerry L.; Landers, Jake; Arias-Rodriguez, Lenin; Greenway, Ryan; Rodriguez Pena, Carlos M.; Tobler, Michael; Kelley, Joanna L.
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Editorial 2024
err2023-12-14
err0
PREAI
errNarum, Shawn; Kelley, Joanna; Sibbett, Ben
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Analyses of 600+insect genomes reveal repetitive element dynamics and highlight biodiversity-scale repeat annotation challenges
err2023-09-22
err14
errOAAI
errSproul, John S.; Hotaling, Scott; Heckenhauer, Jacqueline; Powell, Ashlyn; Marshall, Dez; Larracuente, Amanda M.; Kelley, Joanna L.; Pauls, Steffen U.; Frandsen, Paul B.
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Ghost admixture in eastern gorillas
err2023-07-27
err10
errOAAI
errPawar, Harvinder; Rymbekova, Aigerim; Cuadros-Espinoza, Sebastian; Huang, Xin; de Manuel, Marc; van der Valk, Tom; Lobon, Irene; Alvarez-Estape, Marina; Haber, Marc; Dolgova, Olga; Han, Sojung; Esteller-Cucala, Paula; Juan, David; Ayub, Qasim; Bautista, Ruben; Kelley, Joanna L.; Cornejo, Omar. E.; Lao, Oscar; Andres, Aida. M.; Guschanski, Katerina; Ssebide, Benard; Cranfield, Mike; Tyler-Smith, Chris; Xue, Yali; Prado-Martinez, Javier; Marques-Bonet, Tomas; Kuhlwilm, Martin
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Current advances in primate genomics: novel approaches for understanding evolution and disease
err2023-01-04
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PREAI
errJuan, David; Santpere, Gabriel; Kelley, Joanna L.; Cornejo, Omar E.; Marques-Bonet, Tomas
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