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Tomàs Marquès‐Bonet

illumina inc.

104H-index
450Paper Count
5.2WCitation Count
Published Papers 159
Publication Date
Leaping between branches: Hybridisation and the tangled evolutionary history of true lemurs
err2025-11-25
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errGiacomo Mercuri; Giovanni Merici; Kyle Kai-How Farh; Lukas F.K. Kuderna; Jeffrey Rogers; Tomàs Marques-Bonet; Giuseppe Donati; Riccardo Percudani; Cristian Capelli
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Author Correction: Inferring DNA methylation in non-skeletal tissues of ancient specimens
err2025-09-05
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errYoav Mathov; Malka Nissim-Rafinia; Chen Leibson; Nir Galun; Tomas Marques-Bonet; Arye Kandel; Meir Liebergall; Eran Meshorer; Liran Carmel
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Genomic Signatures of Island Colonisation in Highly Diverse Primates
err2025-07-09
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errI. Colmonero-Costeira; K. Guschanski; S. L. Djaló; N. Fernandes; T. Camará; K. K.-H. Farh; L. F. K. Kuderna; J. Rogers; T. Marques-Bonet; M. W. Bruford; I. M. Russo
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Punic people were genetically diverse with almost no Levantine ancestors
errNATURE
IF48.5
err2025-04-23
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PREAI
errRingbauer, Harald; Salman-Minkov, Ayelet; Regev, Dalit; Olalde, Inigo; Peled, Tomer; Sineo, Luca; Falsone, Gioacchino; van Dommelen, Peter; Mittnik, Alissa; Lazaridis, Iosif; Pettener, Davide; Bofill, Maria; Mezquida, Ana; Costa, Benjami; Jimenez, Helena; Smith, Patricia; Vai, Stefania; Modi, Alessandra; Shaus, Arie; Callan, Kim; Curtis, Elizabeth; Kearns, Aisling; Lawson, Ann Marie; Mah, Matthew; Micco, Adam; Oppenheimer, Jonas; Qiu, Lijun; Stewardson, Kristin; Workman, J. Noah; Marquez-Grant, Nicholas; Saez Romero, Antonio M.; Lavado Florido, Maria Luisa; Jimenez-Arenas, Juan Manuel; Toro Moyano, Isidro Jorge; Viguera, Enrique; Padilla, Jose Suarez; Chamizo, Sonia Lopez; Marques-Bonet, Tomas; Lizano, Esther; Riaza, Alicia Rodero; Olivieri, Francesca; Toti, Pamela; Giuliana, Valentina; Barash, Alon; Carmel, Liran; Boaretto, Elisabetta; Faerman, Marina; Lucci, Michaela; La Pastina, Francesco; Nava, Alessia; Genchi, Francesco; Del Vais, Carla; Lauria, Gabriele; Meli, Francesca; Sconzo, Paola; Catalano, Giulio; Cilli, Elisabetta; Fariselli, Anna Chiara; Fontani, Francesco; Luiselli, Donata; Culleton, Brendan J.; Mallick, Swapan; Rohland, Nadin; Nigro, Lorenzo; Coppa, Alfredo; Caramelli, David; Pinhasi, Ron; Lalueza-Fox, Carles; Gronau, Ilan
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Phylogenetic Signal in Primate Tooth Enamel Proteins and its Relevance for Paleoproteomics
err2025-01-21
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errFong-Zazueta, Ricardo; Krueger, Johanna; Alba, David M.; Aymerich, Xenia; Beck, Robin M. D.; Cappellini, Enrico; Carrillo-Martin, Guillermo; Cirilli, Omar; Clark, Nathan; Cornejo, Omar E.; Farh, Kyle Kai-How; Ferrandez-Peral, Luis; Juan, David; Kelley, Joanna L.; Kuderna, Lukas F. K.; Little, Jordan; Orkin, Joseph D.; Paterson, Ryan S.; Pawar, Harvinder; Marques-Bonet, Tomas; Lizano, Esther
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Screening great ape museum specimens for DNA viruses
err2024-11-30
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errHaemmerle, Michelle; Guellil, Meriam; Trgovec-Greif, Lovro; Cheronet, Olivia; Sawyer, Susanna; Ruiz-Gartzia, Irune; Lizano, Esther; Rymbekova, Aigerim; Gelabert, Pere; Bernardi, Paolo; Han, Sojung; Rattei, Thomas; Schuenemann, Verena J.; Marques-Bonet, Tomas; Guschanski, Katerina; Calvignac-Spencer, Sebastien; Pinhasi, Ron; Kuhlwilm, Martin
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Inferring DNA methylation in non-skeletal tissues of ancient specimens
err2024-11-20
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errMathov, Yoav; Nissim-Rafinia, Malka; Leibson, Chen; Galun, Nir; Marques-Bonet, Tomas; Kandel, Arye; Liebergal, Meir; Meshorer, Eran; Carmel, Liran
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Deep genetic substructure within bonobos
err2024-11-01
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errHan, Sojung; de Filippo, Cesare; Parra, Genis; Meneu, Juan Ramon; Laurent, Romain; Frandsen, Peter; Hvilsom, Christina; Gronau, Ilan; Marques-Bonet, Tomas; Kuhlwilm, Martin; Andres, Aida M.
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Whole genomes of Amazonian uakari monkeys reveal complex connectivity and fast differentiation driven by high environmental dynamism
err2024-10-08
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errHermosilla-Albala, Nuria; Silva, Felipe Ennes; Cuadros-Espinoza, Sebastian; Fontsere, Claudia; Valenzuela-Seba, Alejandro; Pawar, Harvinder; Gut, Marta; Kelley, Joanna L.; Ruibal-Puertas, Sandra; Alentorn-Moron, Pol; Faella, Armida; Lizano, Esther; Farias, Izeni; Hrbek, Tomas; Valsecchi, Joao; Gut, Ivo G.; Rogers, Jeffrey; Farh, Kyle Kai-How; Kuderna, Lukas F. K.; Marques-Bonet, Tomas; Boubli, Jean P.
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Genomic adaptation to small population size and saltwater consumption in the critically endangered Cat Ba langur
err2024-10-02
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errZhang, Liye; Leonard, Neahga; Passaro, Rick; Luan, Mai Sy; Van Tuyen, Pham; Han, Le Thi Ngoc; Cam, Nguyen Huy; Vogelnest, Larry; Lynch, Michael; Fine, Amanda E.; Nga, Nguyen Thi Thanh; Long, Nguyen Van; Rawson, Benjamin M.; Behie, Alison; Nguyen, Truong Van; Le, Minh D.; Nadler, Tilo; Walter, Lutz; Marques-Bonet, Tomas; Hofreiter, Michael; Li, Ming; Liu, Zhijin; Roos, Christian
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The Catalan initiative for the Earth BioGenome Project: contributing local data to global biodiversity genomics
err2024-07-17
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errCorominas, Montserrat; Marques-Bonet, Tomas; Arnedo, Miquel A.; Bayes, Monica; Belmonte, Jordina; Escriva, Hector; Fernandez, Rosa; Gabaldon, Toni; Garnatje, Teresa; Germain, Josep; Niell, Manel; Palero, Ferran; Pons, Joan; Puigdomenech, Pere; Arroyo, Vanesa; Cuevas-Caballe, Cristian; Obiol, Joan Ferrer; Gut, Ivo; Gut, Marta; Hidalgo, Oriane; Izquierdo-Aranega, Guillem; Perez-Sorribes, Laia; Righi, Emilio; Riutort, Marta; Valles, Joan; Rozas, Julio; Alioto, Tyler; Guigo, Roderic
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Illuminating the function of the orphan transporter, SLC22A10, in humans and other primates
err2024-05-23
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errYee, Sook Wah; Ferrandez-Peral, Luis; Alentorn-Moron, Pol; Fontsere, Claudia; Ceylan, Merve; Koleske, Megan L.; Handin, Niklas; Artegoitia, Virginia M.; Lara, Giovanni; Chien, Huan-Chieh; Zhou, Xujia; Dainat, Jacques; Zalevsky, Arthur; Sali, Andrej; Brand, Colin M.; Wolfreys, Finn D.; Yang, Jia; Gestwicki, Jason E.; Capra, John A.; Artursson, Per; Newman, John W.; Marques-Bonet, Tomas; Giacomini, Kathleen M.
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Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy
err2024-01-26
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errLariviere, Delphine; Abueg, Linelle; Brajuka, Nadolina; Gallardo-Alba, Cristobal; Gruening, Bjorn; Ko, Byung June; Ostrovsky, Alex; Palmada-Flores, Marc; Pickett, Brandon D.; Rabbani, Keon; Antunes, Agostinho; Balacco, Jennifer R.; Chaisson, Mark J. P.; Cheng, Haoyu; Collins, Joanna; Couture, Melanie; Denisova, Alexandra; Fedrigo, Olivier; Gallo, Guido Roberto; Giani, Alice Maria; Gooder, Grenville MacDonald; Horan, Kathleen; Jain, Nivesh; Johnson, Cassidy; Kim, Heebal; Lee, Chul; Marques-Bonet, Tomas; O'Toole, Brian; Rhie, Arang; Secomandi, Simona; Sozzoni, Marcella; Tilley, Tatiana; Uliano-Silva, Marcela; van den Beek, Marius; Williams, Robert W.; Waterhouse, Robert M.; Phillippy, Adam M.; Jarvis, Erich D.; Schatz, Michael C.; Nekrutenko, Anton; Formenti, Giulio
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Complex Evolutionary History With Extensive Ancestral Gene Flow in an African Primate Radiation
err2023-11-21
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errJensen, Axel; Swift, Frances; de Vries, Dorien; Beck, Robin M. D.; Kuderna, Lukas F. K.; Knauf, Sascha; Chuma, Idrissa S.; Keyyu, Julius D.; Kitchener, Andrew C.; Farh, Kyle; Rogers, Jeffrey; Marques-Bonet, Tomas; Detwiler, Kate M.; Roos, Christian; Guschanski, Katerina
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Historic Sampling of a Vanishing Beast: Population Structure and Diversity in the Black Rhinoceros
err2023-08-10
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errSanchez-Barreiro, Fatima; De Cahsan, Binia; Westbury, Michael, V; Sun, Xin; Margaryan, Ashot; Fontsere, Claudia; Bruford, Michael W.; Russo, Isa-Rita M.; Kalthoff, Daniela C.; Sicheritz-Ponten, Thomas; Petersen, Bent; Dalen, Love; Zhang, Guojie; Marques-Bonet, Tomas; Gilbert, M. Thomas P.; Moodley, Yoshan
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Ghost admixture in eastern gorillas
err2023-07-27
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errPawar, Harvinder; Rymbekova, Aigerim; Cuadros-Espinoza, Sebastian; Huang, Xin; de Manuel, Marc; van der Valk, Tom; Lobon, Irene; Alvarez-Estape, Marina; Haber, Marc; Dolgova, Olga; Han, Sojung; Esteller-Cucala, Paula; Juan, David; Ayub, Qasim; Bautista, Ruben; Kelley, Joanna L.; Cornejo, Omar. E.; Lao, Oscar; Andres, Aida. M.; Guschanski, Katerina; Ssebide, Benard; Cranfield, Mike; Tyler-Smith, Chris; Xue, Yali; Prado-Martinez, Javier; Marques-Bonet, Tomas; Kuhlwilm, Martin
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Real-time genomics for One Health
err2023-06-16
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errUrban, Lara; Perlas, Albert; Francino, Olga; Marti-Carreras, Joan; Muga, Brenda A.; Mwangi, Jenniffer W.; Boykin Okalebo, Laura; Stanton, Jo-Ann L.; Black, Amanda; Waipara, Nick; Fontsere, Claudia; Eccles, David; Urel, Harika; Reska, Tim; Morales, Hernan E.; Palmada-Flores, Marc; Marques-Bonet, Tomas; Watsa, Mrinalini; Libke, Zane; Erkenswick, Gideon; van Oosterhout, Cock
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Y chromosome sequence and epigenomic reconstruction across human populations
err2023-06-09
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errEsteller-Cucala, Paula; Palmada-Flores, Marc; Kuderna, Lukas F. K.; Fontsere, Claudia; Serres-Armero, Aitor; Dabad, Marc; Torralvo, Maria; Faella, Armida; Ferrandez-Peral, Luis; Llovera, Laia; Fornas, Oscar; Julia, Eva; Ramirez, Erika; Gonzalez, Irene; Hecht, Jochen; Lizano, Esther; Juan, David; Marques-Bonet, Tomas
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Eighty million years of rapid evolution of the primate Y chromosome
err2023-06-02
err11
PREAI
errZhou, Yang; Zhan, Xiaoyu; Jin, Jiazheng; Zhou, Long; Bergman, Juraj; Li, Xuemei; Rousselle, Marjolaine Marie C.; Belles, Meritxell Riera; Zhao, Lan; Fang, Miaoquan; Chen, Jiawei; Fang, Qi; Kuderna, Lukas; Marques-Bonet, Tomas; Kitayama, Haruka; Hayakawa, Takashi; Yao, Yong-Gang; Yang, Huanming; Cooper, David N.; Qi, Xiaoguang; Wu, Dong-Dong; Schierup, Mikkel Heide; Zhang, Guojie
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Comparative genomics reveals the hybrid origin of a macaque group
err2023-06-02
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errZhang, Bao-Lin; Chen, Wu; Wang, Zefu; Pang, Wei; Luo, Meng -Ting; Wang, Sheng; Shao, Yong; He, Wen-Qiang; Deng, Yuan; Zhou, Long; Chen, Jiawei; Yang, Min -Min; Wu, Yajiang; Wang, Lu; Fernandez-Bellon, Hugo; Molloy, Sandra; Meunler, Helene; Wanert, Fanelie; Kuderna, Lukas; Marques-Bonet, Tomas; Roos, Christian; Qi, Xiao-Guang; Li, Ming; Liu, Zhiji; Schierup, Mikkel Heide; Cooper, David N.; Liu, Jianquan; Zheng, Yong-Tang; Zhang, Guojie; Wu, Dong-Dong
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