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Andrew S. Allen

Columbia University

46H-index
245Paper Count
9.4KCitation Count
Published Papers 70
Publication Date
Characterization and bioinformatic filtering of ambient gRNAs in single-cell CRISPR screens using
err2025-02-01
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errOAAI
errLiu, Siyan; Hamilton, Marisa C.; Cowart, Thomas; Barrera, Alejandro; Bounds, Lexi R.; Nelson, Alexander C.; Dornbaum, Sophie F.; Riley, Julia W.; Doty, Richard W.; Allen, Andrew S.; Crawford, Gregory E.; Majoros, William H.; Gersbach, Charles A.
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Non-coding mismatches in HLA Class I genes in the presence of DPB1 mismatches predict worse outcomes in hematopoietic cell transplantation
err2024-09-01
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PREAI
errAskar, M.; Mosbruger, T. L.; Shaw, G.; Duan, Y.; Allen, A.; Duke, J. L.; Olson, T. S.; Monos, D. S.; Hayeck, T. J.
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The role of copy number variants in the genetic architecture of common familial epilepsies
err2024-01-20
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PREAI
errFuerte, Edith P. Almanza; Nguyen, John; Mehaffey, Michelle; Sulovari, Arvis; Wang, Tianyun; Galey, Miranda; Miller, Danny E.; Eichler, Evan E.; Mefford, Heather C.; Abou-Khalil, Bassel; Afawi, Zaid Afawi; Allen, Andrew S.; Amrom, Dina; Andermann, Eva; Bautista, Jocelyn F.; Bellows, Susannah T.; Berkovic, Samuel F.; Bluvstein, Judith; Boro, Alexis; Burgess, Rosemary; Cascino, Gregory D.; Chung, Seo-Kyung; Consalvo, Damian; Cossette, Patrick; Crompton, Douglas E.; Crumrine, Patricia; Curtis, Sarah W.; Delanty, Norman; Devinsky, Orrin; Dlugos, Dennis; Ellis, Colin A.; Epstein, Michael P.; Fiol, Miguel; Fountain, Nathan B.; Freyer, Catharine; Friedman, Dan; Geller, Eric B.; Glauser, Tracy; Glynn, Simon; Goldstein, David B.; Gravel, Micheline; Haas, Kevin; Harris, Rebekah V.; Haut, Sheryl; Heinzen, Erin L.; Helmers, Sandra; Henry, Olivia J.; Joshi, Sucheta; Kirsch, Heidi E.; Kivity, Sara; Knowlton, Robert C.; Kossoff, Eric; Kuzniecky, Ruben; Loeb, Rebecca; Lowenstein, Daniel H.; Marson, Anthony G.; McCormack, Mark; McGuire, Shannon M.; McKenna, Kevin; Motika, Paul V.; Mullen, Saul A.; Novotny, Edward J.; O'Brien, Terence J.; Oliver, Karen L.; Ottman, Ruth; Paolicchi, Juliann M.; Parent, Jack M.; Park, Kristen L.; Paterson, Sarah J.; Petrovski, Slave; Pickrell, William O.; Poduri, Annapurna; Rees, Mark I.; Sadleir, Lynette G.; Scheffer, Ingrid E.; Shellhaas, Renee A.; Sherr, Elliott H.; Shih, Jerry J.; Shinnar, Shlomo; Singh, Rani K.; Sirven, Joseph; Smith, Michael C.; Smith, Philip E. M.; Sperling, Michael R.; Sullivan, Joseph; Thio, Liu Lin; Thomas, Rhys H.; Venkat, Anu; Vining, Eileen P. G.; Von Allmen, Gretchen K.; Weisenberg, Judith; Widdess-Walsh, Peter; Winawer, Melodie R.
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Transcriptional and epigenetic regulators of human CD8+ T cell function identified through orthogonal CRISPR screens
err2023-11-09
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errMcCutcheon, Sean R.; Swartz, Adam M.; Brown, Michael C.; Barrera, Alejandro; Amador, Christian McRoberts; Siklenka, Keith; Humayun, Lucas; ter Weele, Maria A.; Isaacs, James M.; Reddy, Timothy E.; Allen, Andrew S.; Nair, Smita K.; Antonia, Scott J.; Gersbach, Charles A.
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Single-nucleus DNA sequencing reveals hidden somatic loss-of-heterozygosity in Cerebral Cavernous Malformations
err2023-11-02
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errOAAI
errRessler, Andrew K.; Snellings, Daniel A.; Girard, Romuald; Gallione, Carol J.; Lightle, Rhonda; Allen, Andrew S.; Awad, Issam A.; Marchuk, Douglas A.
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Ancestry adjustment improves genome-wide estimates of regional intolerance
err2022-04-06
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errHayeck, Tristan J.; Stong, Nicholas; Baugh, Evan; Dhindsa, Ryan; Turner, Tychele N.; Malakar, Ayan; Mosbruger, Timothy L.; Shaw, Grace Tzun-Wen; Duan, Yuncheng; Ionita-Laza, Iuliana; Goldstein, David; Allen, Andrew S.
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Analysing an allelic series of rare missense variants of CACNA1I in a Swedish schizophrenia cohort
errBRAIN
IF11.7
err2021-12-17
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errBaez-Nieto, David; Allen, Andrew; Akers-Campbell, Seth; Yang, Lingling; Budnik, Nikita; Pupo, Amaury; Shin, Young-Cheul; Genovese, Giulio; Liao, Maofu; Perez-Palma, Eduardo; Heyne, Henrike; Lal, Dennis; Lipscombe, Diane; Pan, Jen Q.
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Focused goodness of fit tests for gene set analyses
err2021-11-27
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PREAI
errZhang, Mengqi; Gelfman, Sahar; Moreno, Cristiane Araujo Martins; McCarthy, Janice M.; Harms, Matthew B.; Goldstein, David B.; Allen, Andrew S.
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Targeted long-read sequencing identifies missing disease-causing variation
err2021-08-01
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errMiller, Danny E.; Sulovari, Arvis; Wang, Tianyun; Loucks, Hailey; Hoekzema, Kendra; Munson, Katherine M.; Lewis, Alexandra P.; Fuerte, Edith P. Almanza; Paschal, Catherine R.; Walsh, Tom; Thies, Jenny; Bennett, James T.; Glass, Ian; Dipple, Katrina M.; Patterson, Karynne; Bonkowski, Emily S.; Nelson, Zoe; Squire, Audrey; Sikes, Megan; Beckman, Erika; Bennett, Robin L.; Earl, Dawn; Lee, Winston; Allikmets, Rando; Perlman, Seth J.; Chow, Penny; Hing, Anne, V; Wenger, Tara L.; Adam, Margaret P.; Sun, Angela; Lam, Christina; Chang, Irene; Zou, Xue; Austin, Stephanie L.; Huggins, Erin; Safi, Alexias; Iyengar, Apoorva K.; Reddy, Timothy E.; Majoros, William H.; Allen, Andrew S.; Crawford, Gregory E.; Kishnani, Priya S.; King, Mary-Claire; Cherry, Tim; Chong, Jessica X.; Bamshad, Michael J.; Nickerson, Deborah A.; Mefford, Heather C.; Doherty, Dan; Eichler, Evan E.
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Coding and noncoding variants in EBF3 are involved in HADDS and simplex autism
err2021-07-13
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errPadhi, Evin M.; Hayeck, Tristan J.; Cheng, Zhang; Chatterjee, Sumantra; Mannion, Brandon J.; Byrska-Bishop, Marta; Willems, Marjolaine; Pinson, Lucile; Redon, Sylvia; Benech, Caroline; Uguen, Kevin; Audebert-Bellanger, Severine; Le Marechal, Cedric; Ferec, Claude; Efthymiou, Stephanie; Rahman, Fatima; Maqbool, Shazia; Maroofian, Reza; Houlden, Henry; Musunuri, Rajeeva; Narzisi, Giuseppe; Abhyankar, Avinash; Hunter, Riana D.; Akiyama, Jennifer; Fries, Lauren E.; Ng, Jeffrey K.; Mehinovic, Elvisa; Stong, Nick; Allen, Andrew S.; Dickel, Diane E.; Bernier, Raphael A.; Gorkin, David U.; Pennacchio, Len A.; Zody, Michael C.; Turner, Tychele N.
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Sub-genic intolerance, ClinVar, and the epilepsies: A whole-exome sequencing study of 29,165 individuals
err2021-06-01
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errMotelow, Joshua E.; Povysil, Gundula; Dhindsa, Ryan S.; Stanley, Kate E.; Allen, Andrew S.; Feng, Yen-Chen Anne; Howrigan, Daniel P.; Abbott, Liam E.; Tashman, Katherine; Cerrato, Felecia; Cusick, Caroline; Singh, Tarjinder; Heyne, Henrike; Byrnes, Andrea E.; Churchhouse, Claire; Watts, Nick; Solomonson, Matthew; Lal, Dennis; Gupta, Namrata; Neale, Benjamin M.; Cavalleri, Gianpiero L.; Cossette, Patrick; Cotsapas, Chris; De Jonghe, Peter; Dixon-Salazar, Tracy; Guerrini, Renzo; Hakonarson, Hakon; Heinzen, Erin L.; Helbig, Ingo; Kwan, Patrick; Marson, Anthony G.; Petrovski, Slave; Kamalakaran, Sitharthan; Sisodiya, Sanjay M.; Stewart, Randy; Weckhuysen, Sarah; Depondt, Chantal; Dlugos, Dennis J.; Scheffer, Ingrid E.; Striano, Pasquale; Freyer, Catharine; Krause, Roland; May, Patrick; McKenna, Kevin; Regan, Brigid M.; Bennett, Caitlin A.; Leu, Costin; Leech, Stephanie L.; O'Brien, Terence J.; Todaro, Marian; Stamberger, Hannah; Andrade, Danielle M.; Ali, Quratulain Zulfiqar; Sadoway, Tara R.; Krestel, Heinz; Schaller, Andre; Papacostas, Savvas S.; Kousiappa, Ioanna; Tanteles, George A.; Christou, Yiolanda; Sterbova, Katalin; Vlckova, Marketa; Sedlackova, Lucie; Lassuthova, Petra; Klein, Karl Martin; Rosenow, Felix; Reif, Philipp S.; Knake, Susanne; Neubauer, Bernd A.; Zimprich, Friedrich; Feucht, Martha; Reinthaler, Eva M.; Kunz, Wolfram S.; Zsurka, Gabor; Surges, Rainer; Baumgartner, Tobias; von Wrede, Randi; Pendziwiat, Manuela; Muhle, Hiltrud; Rademacher, Annika; van Baalen, Andreas; von Spiczak, Sarah; Stephani, Ulrich; Afawi, Zaid; Korczyn, Amos D.; Kanaan, Moien; Canavati, Christina; Kurlemann, Gerhard; Muller-Schluter, Karen; Kluger, Gerhard; Haeusler, Martin; Blatt, Ilan; Lemke, Johannes R.; Krey, Ilona; Weber, Yvonne G.; Wolking, Stefan; Becker, Felicitas; Lauxmann, Stephan; Bosselmann, Christian; Kegele, Josua; Hengsbach, Christian; Rau, Sarah; Steinhoff, Bernhard J.; Schulze-Bonhage, Andreas; Borggraefe, Ingo; Schankin, Christoph J.; Schubert-Bast, Susanne; Schreiber, Herbert; Mayer, Thomas; Korinthenberg, Rudolf; Brockmann, Knut; Wolff, Markus; Dennig, Dieter; Madeleyn, Rene; Kalviainen, Reetta; Saarela, Anni; Timonen, Oskari; Linnankivi, Tarja; Lehesjoki, Anna-Elina; Rheims, Sylvain; Lesca, Gaetan; Ryvlin, Philippe; Maillard, Louis; Valton, Luc; Derambure, Philippe; Bartolomei, Fabrice; Hirsch, Edouard; Michel, Veronique; Chassoux, Francine; Rees, Mark, I; Chung, Seo-Kyung; Pickrell, William O.; Powell, Robert; Baker, Mark D.; Fonferko-Shadrach, Beata; Lawthom, Charlotte; Anderson, Joseph; Schneider, Natascha; Balestrini, Simona; Zagaglia, Sara; Braatz, Vera; Johnson, Michael R.; Auce, Pauls; Sills, Graeme J.; Baum, Larry W.; Sham, Pak C.; Cherny, Stacey S.; Lui, Colin H. T.; Delanty, Norman; Doherty, Colin P.; Shukralla, Arif; El-Naggar, Hany; Widdess-Walsh, Peter; Barisi, Nina; Canafoglia, Laura; Franceschetti, Silvana; Castellotti, Barbara; Granata, Tiziana; Ragona, Francesca; Zara, Federico; Iacomino, Michele; Riva, Antonella; Madia, Francesca; Vari, Maria Stella; Salpietro, Vincenzo; Scala, Marcello; Mancardi, Maria Margherita; Nobili, Lino; Amadori, Elisabetta; Giacomini, Thea; Bisulli, Francesca; Pippucci, Tommaso; Licchetta, Laura; Minardi, Raffaella; Tinuper, Paolo; Muccioli, Lorenzo; Mostacci, Barbara; Gambardella, Antonio; Labate, Angelo; Annesi, Grazia; Manna, Lorella; Gagliardi, Monica; Parrini, Elena; Mei, Davide; Vetro, Annalisa; Bianchini, Claudia; Montomoli, Martino; Doccini, Viola; Barba, Carmen; Hirose, Shinichi; Ishii, Atsushi; Suzuki, Toshimitsu; Inoue, Yushi; Yamakawa, Kazuhiro; Beydoun, Ahmad; Nasreddine, Wassim; Zgheib, Nathalie Khoueiry; Tumiene, Birute; Utkus, Algirdas; Sadleir, Lynette G.; King, Chontelle; Caglayan, S. Hande; Arslan, Mutluay; Yapici, Zuhal; Topaloglu, Pinar; Kara, Bulent; Yis, Uluc; Turkdogan, Dilsad; Gundogdu-Eken, Asli; Bebek, Nerses; Tsai, Meng-Han; Ho, Chen-Jui; Lin, Chih-Hsiang; Lin, Kuang-Lin; Chou, I-Jun; Poduri, Annapurna; Shiedley, Beth R.; Shain, Catherine; Noebels, Jeffrey L.; Goldman, Alicia; Busch, Robyn M.; Jehi, Lara; Najm, Imad M.; Ferguson, Lisa; Khoury, Jean; Glauser, Tracy A.; Clark, Peggy O.; Buono, Russell J.; Ferraro, Thomas N.; Sperling, Michael R.; Lo, Warren; Privitera, Michael; French, Jacqueline A.; Schachter, Steven; Kuzniecky, Ruben, I; Devinsky, Orrin; Hegde, Manu; Greenberg, David A.; Ellis, Colin A.; Goldberg, Ethan; Helbig, Katherine L.; Cosico, Mahgenn; Vaidiswaran, Priya; Fitch, Eryn; Berkovic, Samuel F.; Lerche, Holger; Lowenstein, Daniel H.; Goldstein, David B.
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Correcting signal biases and detecting regulatory elements in STARR-seq data
err2021-03-15
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errOAAI
errKim, Young-Sook; Johnson, Graham D.; Seo, Jungkyun; Barrera, Alejandro; Cowart, Thomas N.; Majoros, William H.; Ochoa, Alejandro; Allen, Andrew S.; Reddy, Timothy E.
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Casual Genetic Variants in Stillbirth
err2021-02-01
err0
PREAI
errStanley, Kate E.; Giordano, Jessica; Thorsten, Vanessa; Buchovecky, Christie; Thomas, Amanda; Ganapathi, Mythily; Liao, Jun; Dharmadhikari, Avinash V.; Revah-Politi, Anya; Ernst, Michelle; Lippa, Natalie; Holmes, Halie; Povysil, Gundula; Hostyk, Joseph; Parker, Corette B.; Goldenberg, Robert; Saade, George R.; Dudley, Donald J.; Pinar, Halit; Hogue, Carol; Reddy, Uma M.; Silver, Robert M.; Aggarwal, Vimla; Allen, Andrew S.; Wapner, Ronald J.; Goldstein, David B.
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Neurogranin, Encoded by the Schizophrenia Risk Gene NRGN, Bidirectionally Modulates Synaptic Plasticity via Calmodulin-Dependent Regulation of the Neuronal Phosphoproteome
err2021-02-01
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errOAAI
errHwang, Hongik; Szucs, Matthew J.; Ding, Lei J.; Allen, Andrew; Ren, Xiaobai; Haensgen, Henny; Gao, Fan; Rhim, Hyewhon; Andrade, Arturo; Pan, Jen Q.; Carr, Steven A.; Ahmad, Rushdy; Xu, Weifeng
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Causal Genetic Variants in Stillbirth
err2020-09-17
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errStanley, Kate E.; Giordano, Jessica; Thorsten, Vanessa; Buchovecky, Christie; Thomas, Amanda; Ganapathi, Mythily; Liao, Jun; Dharmadhikari, Avinash V.; Revah-Politi, Anya; Ernst, Michelle; Lippa, Natalie; Holmes, Halie; Povysil, Gundula; Hostyk, Joseph; Parker, Corette B.; Goldenberg, Robert; Saade, George R.; Dudley, Donald J.; Pinar, Halit; Hogue, Carol; Reddy, Uma M.; Silver, Robert M.; Aggarwal, Vimla; Allen, Andrew S.; Wapner, Ronald J.; Goldstein, David B.
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Biological concepts in human sodium channel epilepsies and their relevance in clinical practice
err2020-02-23
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errBrunklaus, Andreas; Du, Juanjiangmeng; Steckler, Felix; Ghanty, Ismael I.; Johannesen, Katrine M.; Fenger, Christina Duhring; Schorge, Stephanie; Baez-Nieto, David; Wang, Hao-Ran; Allen, Andrew; Pan, Jen Q.; Lerche, Holger; Heyne, Henrike; Symonds, Joseph D.; Zuberi, Sameer M.; Sanders, Stephan; Sheidley, Beth R.; Craiu, Dana; Olson, Heather E.; Weckhuysen, Sarah; DeJonge, Peter; Helbig, Ingo; Van Esch, Hilde; Busa, Tiffany; Milh, Matthieu; Isidor, Bertrand; Depienne, Christel; Poduri, Annapurna; Campbell, Arthur J.; Dimidschstein, Jordane; Moller, Rikke S.; Lal, Dennis
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Arfgef1 haploinsufficiency in mice alters neuronal endosome composition and decreases membrane surface postsynaptic GABAA receptors
err2020-02-01
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errTeoh, JiaJie; Subramanian, Narayan; Pero, Maria Elena; Bartolini, Francesca; Amador, Ariadna; Kanber, Ayla; Williams, Damian; Petri, Sabrina; Yang, Mu; Allen, Andrew S.; Beal, Jules; Haut, Sheryl R.; Frankel, Wayne N.
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Effects of a patient-derived de novo coding alteration of CACNA1I in mice connect a schizophrenia risk gene with sleep spindle deficits
err2020-01-23
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errGhoshal, Ayan; Uygun, David S.; Yang, Lingling; McNally, James M.; Lopez-Huerta, Violeta G.; Arias-Garcia, Mario A.; Baez-Nieto, David; Allen, Andrew; Fitzgerald, Megan; Choi, Soonwook; Zhang, Qiangge; Hope, Jen M.; Yan, Karena; Mao, Xiaohong; Nicholson, Thomas B.; Imaizumi, Kazuo; Fu, Zhanyan; Feng, Guoping; Brown, Ritchie E.; Strecker, Robert E.; Purcell, Shaun M.; Pan, Jen Q.
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Quantitative analysis of phenotypic elements augments traditional electroclinical classification of common familial epilepsies
err2019-10-17
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errAbou-Khalil, Bassel; Afawi, Zaid; Allen, Andrew S.; Bautista, Jocelyn F.; Bellows, Susannah T.; Berkovic, Samuel F.; Bluvstein, Judith; Burgess, Rosemary; Cascino, Gregory; Cossette, Patrick; Cristofaro, Sabrina; Crompton, Douglas E.; Delanty, Norman; Devinsky, Orrin; Dlugos, Dennis; Ellis, Colin A.; Epstein, Michael P.; Fountain, Nathan B.; Freyer, Catharine; Geller, Eric B.; Glauser, Tracy; Glynn, Simon; Goldberg-Stern, Hadassa; Goldstein, David B.; Gravel, Micheline; Haas, Kevin; Haut, Sheryl; Heinzen, Erin L.; Kirsch, Heidi E.; Kivity, Sara; Knowlton, Robert; Korczyn, Amos D.; Kossoff, Eric; Kuzniecky, Ruben; Loeb, Rebecca; Lowenstein, Daniel H.; Marson, Anthony G.; McCormack, Mark; McKenna, Kevin; Mefford, Heather C.; Motika, Paul; Mullen, Saul A.; O'Brien, Terence J.; Ottman, Ruth; Paolicchi, Juliann; Parent, Jack M.; Paterson, Sarah; Petrou, Steven; Petrovski, Slave; Pickrell, William Owen; Poduri, Annapurna; Rees, Mark I.; Sadleir, Lynette G.; Scheffer, Ingrid E.; Shih, Jerry; Singh, Rani; Sirven, Joseph; Smith, Michael; Smith, Phil E. M.; Thio, Liu Lin; Thomas, Rhys H.; Venkat, Anu; Vining, Eileen; Von Allmen, Gretchen; Weisenberg, Judith; Widdess-Walsh, Peter; Winawer, Melodie R.
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