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J

Jay Shendure

University of Washington

167H-index
662Paper Count
12.3WCitation Count
Published Papers 280
Publication Date
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Technical and biological sources of noise confound multiplexed enhancer AAV screening
errNature Communications
IF15.7
err2026-04-28
err0
errOAAI
errAvery C. Hunker; John K. Mich; Naz Taskin; Amy Torkelson; Trangthanh Cardenas; Jean-Benoît Lalanne; Joseph T. Mahoney; Darren Bertagnolli; Anish Bhaswanth Chakka; Rushil Chakrabarty; Nicholas P. Donadio; Rebecca Ferrer; Molly Gasperini; Jeff Goldy; Junitta Guzman; Kelly Jin; Shannon Khem; Rana Kutsal; Refugio A. Martinez; Dakota Newman; Nick Pena; Christine Rimorin; Dana Rocha; Nadiya V. Shapovalova; Michael Tieu; Natalie Weed; Thomas Zhou; Rebecca Hodge; Shenqin Yao; Jay Shendure; Kimberly A. Smith; Ed S. Lein; Bosiljka Tasic; Boaz P. Levi; Jonathan T. Ting
errShare
errSave
Pool-packaged AAV libraries exhibit extensive length-dependent and homology-dependent chimerism
errNature Biotechnology
IF41.7
err2026-04-28
err0
errOAAI
errJean-Benoît Lalanne; Chau Huynh; John K. Mich; Avery C. Hunker; Troy A. McDiarmid; Haedong Kim; Boaz P. Levi; Jonathan T. Ting; Jay Shendure
errShare
errSave
The proteomic landscape and temporal dynamics of human and mouse gastruloid development
errNature Cell Biology
IF19.1
err2026-04-24
err0
errOAAI
errRiddhiman K. Garge; Valerie Lynch; Rose Fields; Silvia Casadei; Sabrina Best; Jeremy Stone; Matthew Snyder; Connor Kubo; Arata Wakimoto; Zukai Liu; Chris D. McGann; Jay Shendure; Lea M. Starita; Nobuhiko Hamazaki; Devin K. Schweppe
errShare
errSave
A multiplex, prime editing framework for identifying drug resistance variants at scale
errCell Genomics
IF9
err2026-02-20
err0
errOAAI
errFlorence M.C. Abadie; Chase C. Suiter; Nahum T. Smith; Riza M. Daza; Mary C. Rominger; Phoebe Parrish; Troy A. McDiarmid; Jean-Benoît Lalanne; Beth Martin; Diego Calderon; Amira Ellison; Alice H. Berger; Jay Shendure; Lea M. Starita
errShare
errSave
Multichannel genomic recording of biological information with ENGRAM
errNature Protocols
IF16
err2026-02-11
err0
PREAI
errJenny F. Nathans; Troy A. McDiarmid; Wei Chen; Jay Shendure
errShare
errSave
Genetic and epigenetic screens in primary human T cells link candidate causal autoimmune variants to T cell networks
errNature Genetics
IF0
err2025-09-18
err0
errOAAI
errChing-Huang Ho; Maxwell A. Dippel; Meghan S. McQuade; LeAnn P. Nguyen; Arpit Mishra; Stephan Pribitzer; Samantha Hardy; Harshpreet Chandok; Florence M. Chardon; Troy A. McDiarmid; Hannah A. DeBerg; Jane H. Buckner; Jay Shendure; Carl G. de Boer; Michael H. Guo; Ryan Tewhey; John P. Ray
errShare
errSave
CTCF-mediated insulation and chromatin environment modulate Car5b escape from X inactivation
errBMC BIOLOGY
IF4.5
err2025-03-03
err0
errOAAI
errFang, He; Tronco, Ana R.; Bonora, Giancarlo; Nguyen, Truong; Thakur, Jitendra; Berletch, Joel B.; Filippova, Galina N.; Henikoff, Steven; Shendure, Jay; Noble, William S.; Duan, Zhijun; Disteche, Christine M.; Deng, Xinxian
errShare
errSave
Cross-species imputation and comparison of single-cell transcriptomic profiles
errGENOME BIOLOGY
IF9.4
err2025-02-26
err0
errOAAI
errZhang, Ran; Yang, Mu; Schreiber, Jacob; O'Day, Diana R.; Turner, James M. A.; Shendure, Jay; Noble, William Stafford; Disteche, Christine M.
errShare
errSave
Combinatorial mapping of E3 ubiquitin ligases to their target substrates
errMOLECULAR CELL
IF16.6
err2025-02-01
err2
errOAAI
errSuiter, Chase C.; Calderon, Diego; Lee, David S.; Chiu, Melodie; Jain, Shruti; Chardon, Florence M.; Lee, Choli; Daza, Riza M.; Trapnell, Cole; Zheng, Ning; Shendure, Jay
errShare
errSave
SARS-CoV-2 Diversity and Transmission on a University Campus across Two Academic Years during the Pandemic
errCLINICAL CHEMISTRY
IF6.3
err2025-01-03
err0
PREAI
errCasto, Amanda M.; Paredes, Miguel I.; Bennett, Julia C.; Luiten, Kyle G.; Han, Peter D.; Gamboa, Luis S.; Mcdermot, Evan; Gottlieb, Geoffrey S.; Acker, Zachary; Lo, Natalie K.; Mcdonald, Devon; Mccaffrey, Kathryn M.; Figgins, Marlin D.; Lockwood, Christina M.; Shendure, Jay; Uyeki, Timothy M.; Starita, Lea M.; Bedford, Trevor; Chu, Helen Y.; Weil, Ana A.
errShare
errSave
The lives of cells, recorded
errNATURE REVIEWS GENETICS
IF52
err2024-11-25
err0
errOAAI
errAskary, Amjad; Chen, Wei; Choi, Junhong; Du, Lucia Y.; Elowitz, Michael B.; Gagnon, James A.; Schier, Alexander F.; Seidel, Sophie; Shendure, Jay; Stadler, Tanja; Tran, Martin
errShare
errSave
Efficient and highly amplified imaging of nucleic acid targets in cellular and histopathological samples with pSABER
errNATURE METHODS
IF32.1
err2024-11-15
err0
PREAI
errAttar, Sahar; Browning, Valentino E.; Krebs, Mary; Liu, Yuzhen; Nichols, Eva K.; Tsue, Ashley F.; Shechner, David M.; Shendure, Jay; Lieberman, Joshua A.; Schweppe, Devin K.; Akilesh, Shreeram; Beliveau, Brian J.
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errSave
Clinical and Genomic Epidemiology of Coxsackievirus A21 and Enterovirus D68 in Homeless Shelters, King County, Washington, USA, 2019-2021
errEMERGING INFECTIOUS DISEASES
IF6.6
err2024-11-01
err0
PREAI
errCox, Sarah N.; Casto, Amanda M.; Franko, Nicholas M.; Chow, Eric J.; Han, Peter D.; Gamboa, Luis; Pfau, Brian; Xie, Hong; Kong, Kevin; Sereewit, Jaydee; Rolfes, Melissa A.; Mosites, Emily; Uyeki, Timothy M.; Greninger, Alexander L.; Carone, Marco; Shim, M. Mia; Bedford, Trevor; Shendure, Jay; Boeckh, Michael; Englund, Janet A.; Starita, Lea M.; Roychoudhury, Pavitra; Chu, Helen Y.
errShare
errSave
Multiplex, single-cell CRISPRa screening for cell type specific regulatory elements
errNATURE COMMUNICATIONS
IF15.7
err2024-09-18
err0
errOAAI
errChardon, Florence M.; McDiarmid, Troy A.; Page, Nicholas F.; Daza, Riza M.; Martin, Beth K.; Domcke, Silvia; Regalado, Samuel G.; Lalanne, Jean-Benoit; Calderon, Diego; Li, Xiaoyi; Starita, Lea M.; Sanders, Stephan J.; Ahituv, Nadav; Shendure, Jay
errShare
errSave
Single-cell analysis of chromatin and expression reveals age- and sex-associated alterations in the human heart
errCOMMUNICATIONS BIOLOGY
IF5.1
err2024-08-26
err2
errOAAI
errRead, David F.; Booth, Gregory T.; Daza, Riza M.; Jackson, Dana L.; Gladden, Rula Green; Srivatsan, Sanjay R.; Ewing, Brent; Franks, Jennifer M.; Spurrell, Cailyn H.; Gomes, Anne Roshella; O'Day, Diana; Gogate, Aishwarya A.; Martin, Beth K.; Larson, Haleigh; Pfleger, Christian; Starita, Lea; Lin, Yiing; Shendure, Jay; Lin, Shin; Trapnell, Cole
errShare
errSave
Retinoic acid induces human gastruloids with posterior embryo-like structures
errNATURE CELL BIOLOGY
IF19.1
err2024-08-20
err2
errOAAI
errHamazaki, Nobuhiko; Yang, Wei; Kubo, Connor A.; Qiu, Chengxiang; Martin, Beth K.; Garge, Riddhiman K.; Regalado, Samuel G.; Nichols, Eva K.; Pendyala, Sriram; Bradley, Nicholas; Fowler, Douglas M.; Lee, Choli; Daza, Riza M.; Srivatsan, Sanjay; Shendure, Jay
errShare
errSave
Molecular recording using DNA Typewriter
errNATURE PROTOCOLS
IF16
err2024-06-06
err1
PREAI
errLiao, Hanna; Choi, Junhong; Shendure, Jay
errShare
errSave
Meningioma transcriptomic landscape demonstrates novel subtypes with regional associated biology and patient outcome
errCELL GENOMICS
IF9
err2024-06-01
err3
errOAAI
errThirimanne, H. Nayanga; Almiron-Bonnin, Damian; Nuechterlein, Nicholas; Arora, Sonali; Jensen, Matt; Parada, Carolina A.; Qiu, Chengxiang; Szulzewsky, Frank; English, Collin W.; Chen, William C.; Sievers, Philipp; Nassiri, Farshad; Wang, Justin Z.; Klisch, Tiemo J.; Aldape, Kenneth D.; Patel, Akash J.; Cimino, Patrick J.; Zadeh, Gelareh; Sahm, Felix; Raleigh, David R.; Shendure, Jay; Ferreira, Manuel; Holland, Eric C.
errShare
errSave
Impacts of human mobility on the citywide transmission dynamics of 18 respiratory viruses in pre- and post-COVID-19 pandemic years
errNATURE COMMUNICATIONS
IF15.7
err2024-05-16
err4
errOAAI
errPerofsky, Amanda C.; Hansen, Chelsea L.; Burstein, Roy; Boyle, Shanda; Prentice, Robin; Marshall, Cooper; Reinhart, David; Capodanno, Ben; Truong, Melissa; Schwabe-Fry, Kristen; Kuchta, Kayla; Pfau, Brian; Acker, Zack; Lee, Jover; Sibley, Thomas R.; McDermot, Evan; Rodriguez-Salas, Leslie; Stone, Jeremy; Gamboa, Luis; Han, Peter D.; Adler, Amanda; Waghmare, Alpana; Jackson, Michael L.; Famulare, Michael; Shendure, Jay; Bedford, Trevor; Chu, Helen Y.; Englund, Janet A.; Starita, Lea M.; Viboud, Cecile
errShare
errSave
Multiplex profiling of developmental cis-regulatory elements with quantitative single-cell expression reporters
errNATURE METHODS
IF32.1
err2024-05-09
err2
errOAAI
errLalanne, Jean-Benoit; Regalado, Samuel G.; Domcke, Silvia; Calderon, Diego; Martin, Beth K.; Li, Xiaoyi; Li, Tony; Suiter, Chase C.; Lee, Choli; Trapnell, Cole; Shendure, Jay
errShare
errSave

Research Directions

No research directions
Co-authors
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