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L

Lenore Cowen

flatiron institute

30H-index
167Paper Count
4.3KCitation Count
Published Papers 19
Publication Date
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Memory-efficient, accelerated protein interaction inference with blocked, multi-GPU D-SCRIPT
errBIOINFORMATICS
IF5.4
err2025-10-01
err0
PREAI
errSchaffer, Daniel E.; Sledzieski, Samuel; Cowen, Lenore; Berger, Bonnie
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Contrastive learning in protein language space predicts interactions between drugs and protein targets
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2023-06-08
err45
errOAAI
errSingh, Rohit; Sledzieski, Samuel; Bryson, Bryan; Cowen, Lenore; Berger, Bonnie
errShare
errSave
Data-driven discovery of spatiotemporal coherent patterns in pulsating soft coral tentacle motion with dynamic mode decomposition
errPHYSICAL REVIEW RESEARCH
IF4.2
err2023-03-14
err5
errOAAI
errLi, Shuaifeng; Roger, Liza M.; Klein-Seetharaman, Judith; Cowen, Lenore J.; Lewinski, Nastassja A.; Yang, Jinkyu
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errSave
Insulin and reef-building corals
errJOURNAL OF BIOLOGICAL CHEMISTRY
IF3.9
err2023-01-01
err0
errOAAI
errRoger, Liza; Murthy, Meghana; Weinzweig, Simon; Jasbi, Paniz; Ghirlanda, Giovanna; Cowen, Lenore; Lewinski, Nastassja; Klein-Seetharaman, Judith
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errSave
Evaluation of fluorescence-based viability stains in cells dissociated from scleractinian coral Pocillopora damicornis
errSCIENTIFIC REPORTS
IF3.9
err2022-09-12
err6
errOAAI
errRoger, Liza M.; Darko, Yaa Adarkwa; Bernas, Tytus; White, Frances; Olaosebikan, Monsurat; Cowen, Lenore; Klein-Seetharaman, Judith; Lewinski, Nastassja A.
errShare
errSave
MEDFORD: A human- and machine-readable metadata markup language
errDATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION
IF3.6
err2022-08-17
err1
errOAAI
errShpilker, Polina; Freeman, John; McKelvie, Hailey; Ashey, Jill; Fonticella, Jay-Miguel; Putnam, Hollie; Greenberg, Jane; Cowen, Lenore; Couch, Alva; Daniels, Noah M.
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errSave
Bioinformatics of Corals: Investigating Heterogeneous Omics Data from Coral Holobionts for Insight into Reef Health and Resilience
errANNUAL REVIEW OF BIOMEDICAL DATA SCIENCE
IF6
err2022-08-10
err4
PREAI
errCowen, Lenore J.; Putnam, Hollie M.
errShare
errSave
Majority Vote Cascading: A Semi-Supervised Framework for Improving Protein Function Prediction
errIEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS
IF3.4
err2022-07-01
err0
errOAAI
errLazarsfeld, John; Rodriguez, Jonathan; Erden, Mert; Liu, Yuelin; Cowen, Lenore J.
errShare
errSave
Bioengineered models of Parkinson's disease using patient-derived dopaminergic neurons exhibit distinct biological profiles in a 3D microenvironment
errCELLULAR AND MOLECULAR LIFE SCIENCES
IF6.2
err2022-01-19
err16
errOAAI
errFiore, Nicholas J.; Ganat, Yosif M.; Devkota, Kapil; Batorsky, Rebecca; Lei, Ming; Lee, Kyongbum; Cowen, Lenore J.; Croft, Gist; Noggle, Scott A.; Nieland, Thomas J. F.; Kaplan, David L.
errShare
errSave
D-SCRIPT translates genome to phenome with sequence-based, structure-aware, genome-scale predictions of protein-protein interactions
errCELL SYSTEMS
IF7.7
err2021-10-01
err70
errOAAI
errSledzieski, Samuel; Singh, Rohit; Cowen, Lenore; Berger, Bonnie
errShare
errSave
Cell shape, and not 2D migration, predicts extracellular matrix-driven 3D cell invasion in breast cancer
errAPL BIOENGINEERING
IF4.1
err2020-05-05
err41
errOAAI
errBaskaran, Janani P.; Weldy, Anna; Guarin, Justinne; Munoz, Gabrielle; Shpilker, Polina H.; Kotlik, Michael; Subbiah, Nandita; Wishart, Andrew; Peng, Yifan; Miller, Miles A.; Cowen, Lenore; Oudin, Madeleine J.
errShare
errSave
Network propagation: a universal amplifier of genetic associations
errNATURE REVIEWS GENETICS
IF52
err2017-06-12
err445
PREAI
errCowen, Lenore; Ideker, Trey; Raphael, Benjamin J.; Sharan, Roded
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errSave
MRFy: Remote Homology Detection for Beta-Structural Proteins Using Markov Random Fields and Stochastic Search
errIEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS
IF3.4
err2015-01-01
err7
errOAAI
errDaniels, Noah M.; Gallant, Andrew; Ramsey, Norman; Cowen, Lenore J.
errShare
errSave
Touring Protein Space with Matt
errIEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS
IF3.4
err2012-01-01
err10
errOAAI
errDaniels, Noah M.; Kumar, Anoop; Cowen, Lenore J.; Menke, Matt
errShare
errSave
STITCHER: Dynamic assembly of likely amyloid and prion β-structures from secondary structure predictions
errPROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
IF2.8
err2011-11-17
err18
errOAAI
errBryan, Allen W., Jr.; O'Donnell, Charles W.; Menke, Matthew; Cowen, Lenore J.; Lindquist, Susan; Berger, Bonnie
errShare
errSave
Markov random fields reveal an N-terminal double beta-propeller motif as part of a bacterial hybrid two-component sensor system
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2010-02-10
err25
errOAAI
errMenke, Matt; Berger, Bonnie; Cowen, Lenore
errShare
errSave
Fold recognition and accurate sequence-structure alignment of sequences directing β-sheet proteins
errPROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
IF2.8
err2006-03-17
err30
PREAI
errMcDonnell, Andrew V.; Menke, Matthew; Palmer, Nathan; King, Jonathan; Cowen, Lenore; Berger, Bonnie
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errSave
BETAWRAP:: Successful prediction of parallel β-helices from primary sequence reveals an association with many microbial pathogens
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2001-12-18
err104
errOAAI
errBradley, P; Cowen, L; Menke, M; King, J; Berger, B
errShare
errSave
Fast distributed network decompositions and covers
errJOURNAL OF PARALLEL AND DISTRIBUTED COMPUTING
IF4
err1996-12-01
err38
errOAAI
errAwerbuch, B; Berger, B; Cowen, L; Peleg, D
errShare
errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
D
David L. Kaplan
H-index: 194 · Papers: 2.4K
S
Susan Lindquist
H-index: 140 · Papers: 582
T
Trey Ideker
H-index: 108 · Papers: 629
B
Bonnie Berger
H-index: 85 · Papers: 515
B
Benjamin J. Raphael
H-index: 79 · Papers: 445
View more