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Ville Mustonen

multidisciplinary center of excellence in antimicrobial resistance research

49H-index
137Paper Count
2.9WCitation Count
Published Papers 39
Publication Date
Long-read metagenomics and methylation-based binning support the discovery of antibiotic resistance gene–host associations in complex communities
err2026-07-13
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errOAAI
errMelina Markkanen; Heidi Putkuri; Dovydas Kičiatovas; Ville Mustonen; Marko Virta; Antti Karkman
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Community state shifts driven by total carbon availability over resource complexity in a synthetic microbial community
err2026-05-29
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errOAAI
errAnna M Bischofberger; Johannes Cairns; Inga-Katariina Aapalampi; Sanna Pausio; Meri Lindqvist; Ville Mustonen; Teppo Hiltunen; null
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Turnover shapes evolution of birth and death rates
err2025-06-01
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errOAAI
errKuosmanen, Teemu; Sarkka, Simo; Mustonen, Ville
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Time-travelling pathogens and their risk to ecological communities
err2023-07-27
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errOAAI
errStrona, Giovanni; Bradshaw, Corey J. A.; Cardoso, Pedro L.; Gotelli, Nicholas; Guillaume, Frederic L.; Manca, Federica; Mustonen, Ville L.; Zaman, Luis
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Steering and controlling evolution - from bioengineering to fighting pathogens
err2023-07-03
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errOAAI
errLaessig, Michael; Mustonen, Ville; Nourmohammad, Armita
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Understanding cellular growth strategies via optimal control
err2023-01-04
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errOAAI
errMononen, Tommi; Kuosmanen, Teemu; Cairns, Johannes; Mustonen, Ville
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The mutational signatures of formalin fixation on the human genome
err2022-09-06
err31
errOAAI
errGuo, Qingli; Lakatos, Eszter; Bakir, Ibrahim Al; Curtius, Kit; Graham, Trevor A.; Mustonen, Ville
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Strong selective environments determine evolutionary outcome in time-dependent fitness seascapes
err2022-06-01
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errOAAI
errCairns, Johannes; Borse, Florian; Mononen, Tommi; Hiltunen, Teppo; Mustonen, Ville
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Machine Learning Prediction of Resistance to Subinhibitory Antimicrobial Concentrations from Escherichia coli Genomes
err2021-08-31
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errOAAI
errBenkwitz-Bedford, Sam; Palm, Martin; Demirtas, Talip Yasir; Mustonen, Ville; Farewell, Anne; Warringer, Jonas; Parts, Leopold; Moradigaravand, Danesh
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Genomic Epidemiology and Evolution of Escherichia coli in Wild Animals in Mexico
errMSPHERE
IF3.1
err2021-02-24
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errOAAI
errMurphy, Robert; Palm, Martin; Mustonen, Ville; Warringer, Jonas; Farewell, Anne; Parts, Leopold; Moradigaravand, Danesh
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Repeatable ecological dynamics govern the response of experimental communities to antibiotic pulse perturbation
err2020-08-10
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errOAAI
errCairns, Johannes; Jokela, Roosa; Becks, Lutz; Mustonen, Ville; Hiltunen, Teppo
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A community effort to create standards for evaluating tumor subclonal reconstruction
err2020-01-09
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errOAAI
errSalcedo, Adriana; Tarabichi, Maxime; Espiritu, Shadrielle Melijah G.; Deshwar, Amit G.; David, Matei; Wilson, Nathan M.; Dentro, Stefan; Wintersinger, Jeff A.; Liu, Lydia Y.; Ko, Minjeong; Sivanandan, Srinivasan; Zhang, Hongjiu; Zhu, Kaiyi; Ou Yang, Tai-Hsien; Chilton, John M.; Buchanan, Alex; Lalansingh, Christopher M.; P'ng, Christine; Anghel, Catalina V.; Umar, Imaad; Lo, Bryan; Zou, William; Simpson, Jared T.; Stuart, Joshua M.; Anastassiou, Dimitris; Guan, Yuanfang; Ewing, Adam D.; Ellrott, Kyle; Wedge, David C.; Morris, Quaid; Van Loo, Peter; Boutros, Paul C.; Jha, Alokkumar; Huang, Tanxiao; Yang, Tsun-Po; Peifer, Martin; Sahinalp, Cenk; Malikic, Salem; Vazquez-Garcia, Ignacio; Mustonen, Ville; Yang, Hsih-Te; Lee, Ken-Ray; Ji, Yuan; Sengupta, Subhajit; Rudewicz, Justine; Nikolski, Macha; Schaeverbeke, Quentin; Yuan, Ke; Markowetz, Florian; Macintyre, Geoff; Cmero, Marek; Chaudhary, Belal; Leshchiner, Ignaty; Livitz, Dimitri; Getz, Gad; Loher, Phillipe; Yu, Kaixian; Wang, Wenyi; Zhu, Hongtu
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Shared Molecular Targets Confer Resistance over Short and Long Evolutionary Timescales
err2019-01-17
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errLi, Jing; Vazquez-Garcia, Ignacio; Persson, Karl; Gonzalez, Asier; Yue, Jia-Xing; Barre, Benjamin; Hall, Michael N.; Long, Anthony; Warringer, Jonas; Mustonen, Ville; Liti, Gianni
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The evolutionary landscape of colorectal tumorigenesis
err2018-08-31
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errOAAI
errCross, William; Kovac, Michal; Mustonen, Ville; Temko, Daniel; Davis, Hayley; Baker, Ann-Marie; Biswas, Sujata; Arnold, Roland; Chegwidden, Laura; Gatenbee, Chandler; Anderson, Alexander R.; Koelzer, Viktor H.; Martinez, Pierre; Jiang, Xiaowei; Domingo, Enric; Woodcock, Dan J.; Feng, Yun; Kovacova, Monika; Maughan, Tim; Jansen, Marnix; Rodriguez-Justo, Manuel; Ashraf, Shazad; Guy, Richard; Cunningham, Christopher; East, James E.; Wedge, David C.; Wang, Lai Mun; Palles, Claire; Heinimann, Karl; Sottoriva, Andrea; Leedham, Simon J.; Graham, Trevor A.; Tomlinson, Ian P. M.
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Pervasive intra-tumour heterogeneity and subclonal selection across cancer types
err2018-07-01
err0
PREAI
errDentro, Stefan; Leshchiner, Ignaty; Haase, Kerstin; Wintersinger, Jeff; Deshwar, Amit; Tarabichi, Maxime; Rubanova, Yulia; Yu, Kaixian; Garcia, Ignacio Vazquez; Macintyre, Geoff; Kleinheinz, Kortine; Livitz, Dimitri; Malikic, Salem; Donmez, Nilgun; Sengupta, Subhajit; Ji, Yuan; Demeulemeester, Jonas; Anur, Pavana; Jolly, Clemency; Cmero, Marek; Rosebrock, Daniel; Schumacher, Steve; Fan, Yu; Fittall, Matthew; Yao, Xiaotong; Lee, Juhee; Schlesner, Matthias; Zhu, Hongtu; Adams, David; Getz, Gad; Boutros, Paul; Imielinski, Marcin; Beroukhim, Rameen; Sahinalp, Cenk; Peifer, Martin; Martincorena, Inigo; Markowetz, Florian; Mustonen, Ville; Yuan, Ke; Gerstung, Moritz; Wang, Wenyi; Spellman, Paul; Morris, Quaid; Wedge, David; Van Loo, Peter
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The evolutionary history of 2,658 cancers
err2018-07-01
err0
PREAI
errJolly, Clemency; Gerstung, Moritz; Leshchiner, Ignaty; Dentro, Stefan C.; Gonzalez, Santiago; Mitchell, Thomas J.; Rubanova, Yulia; Anur, Pavana; Rosebrock, Daniel; Yu, Kaixian; Tarabichi, Maxime; Deshwar, Amit; Wintersinger, Jeff; Kleinheinz, Kortine; Vasquez-Garcia, Ignacio; Haase, Kerstin; Sengupta, Subhajit; Macintyre, Geoff; Malikic, Salem; Donmez, Nilgun; Livitz, Dimitri G.; Cmero, Mark; Demeulemeester, Jonas; Schumacher, Steve; Fan, Yu; Yao, Xiaotong; Lee, Juhee; Schlesner, Matthias; Boutros, Paul C.; Bowtell, David D.; Zhu, Hongtu; Getz, Gad; Imielinski, Marcin; Beroukhim, Rameen; Sahinalp, S. Cenk; Ji, Yuan; Peifer, Martin; Markowetz, Florian; Mustonen, Ville; Juan, Ke; Wang, Wenyi; Morris, Quaid D.; Spellman, Paul T.; Wedge, David C.; Van Loo, Peter
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Uncovering Natural Longevity Alleles from Intercrossed Pools of Aging Fission Yeast Cells
err2018-02-08
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errOAAI
errEllis, David A.; Mustonen, Ville; Rodriguez-Lopez, Maria; Rallis, Charalampos; Malecki, Michal; Jeffares, Daniel C.; Bahler, Jurg
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Clonal Heterogeneity Influences the Fate of New Adaptive Mutations
err2017-10-01
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errVazquez-Garcia, Ignacio; Salinas, Francisco; Li, Jing; Fischer, Andrej; Barre, Benjamin; Hallin, Johan; Bergstrom, Anders; Alonso-Perez, Elisa; Warringer, Jonas; Mustonen, Ville; Liti, Gianni
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Rapid identification of genes controlling virulence and immunity in malaria parasites
err2017-07-12
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errAbkallo, Hussein M.; Martinelli, Axel; Inoue, Megumi; Ramaprasad, Abhinay; Xangsayarath, Phonepadith; Gitaka, Jesse; Tang, Jianxia; Yahata, Kazuhide; Zoungrana, Augustin; Mitaka, Hayato; Acharjee, Arita; Datta, Partha P.; Hunt, Paul; Carter, Richard; Kaneko, Osamu; Mustonen, Ville; Illingworth, Christopher J. R.; Pain, Arnab; Culleton, Richard
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