Not logged in Deep generative AI models analyzing circulating orphan non-coding RNAs enable detection of early-stage lung cancer Karimzadeh, Mehran; Momen-Roknabadi, Amir; Cavazos, Taylor B.; Fang, Yuqi; Chen, Nae-Chyun; Multhaup, Michael; Yen, Jennifer; Ku, Jeremy; Wang, Jieyang; Zhao, Xuan; Murzynowski, Philip; Wang, Kathleen; Hanna, Rose; Huang, Alice; Corti, Diana; Nguyen, Dang; Lam, Ti; Kilinc, Seda; Arensdorf, Patrick; Chau, Kimberly H.; Hartwig, Anna; Fish, Lisa; Li, Helen; Behsaz, Babak; Elemento, Olivier; Zou, James; Hormozdiari, Fereydoun; Alipanahi, Babak; Goodarzi, Hani Share Save
Predicting tumor ER and HER2 status using a cell-free RNA liquid biopsy assay Schwartzberg, L. S.; Yen, J.; Boyle, E.; Cavazos, T.; Karimzadeh, M.; Heydari, H.; Fish, L.; Trivedi, R.; Hormozdiari, F.; Lazar, A.; Alipanahi, B. Share Save
Cell-free orphan noncoding RNAs and AI enable early detection of invasive breast cancer and ductal carcinoma in-situ Tbeileh, Noura; Cavazos, Taylor; Karimzadeh, Mehran; Wang, Jeffrey; Huang, Alice; Dung Ngoc Lam; Kilinc, Seda; Wang, Jieyang; Zhao, Xuan; Pohl, Andy; Li, Helen; Fish, Lisa; Chau, Kimberly; Francis, Marra; Schwartzberg, Lee; Arensdorf, Patrick; Goodarzi, Hani; Hormozdiari, Fereydoun; Alipanahi, Babak Share Save
Beyond detection: AI-based classification of breast cancer invasiveness using cellfree orphan non-coding RNAs Karimzadeh, Mehran; Cavazos, Taylor B.; Chen, Nae-Chyun; Tbeileh, Noura K.; Siegel, David; Momen-Roknabadi, Amir; Yen, Jennifer; Ku, Jeremy; Chen, Selina; Corti, Diana; Huang, Alice; Nguyen, Dang; Hanna, Rose; Lam, Ti; Kilinc, Seda; Murzynowski, Philip; Wang, Jieyang; Zhao, Xuan; Pohl, Andy; Behsaz, Babak; Li, Helen; Fish, Lisa; Chau, Kim H.; Francis, Marra S.; Van't Veer, Laura J.; Esserman, Laura J.; Arensdorf, Patrick A.; Goodarzi, Hani; Hormozdiari, Fereydoun; Alipanahi, Babak Share Save
Orphan noncoding RNA (oncRNA) liquid biopsy assay is prognostic for survival in patients with triple-negative breast cancer (TNBC) and residual disease Yoder, Rachel; Yen, Jennifer; Karimzadeh, Mehran; Staley, Joshua M.; Fernandez, India; Heinrich, Adam C.; Hormozdiari, Fereydoun; Gregg, Jeffrey; Godwin, Andrew K.; Acerbi, Irene; Trivedi, Raaj; Alipanahi, Babak; Stecklein, Shane R.; Sharma, Priyanka Share Save
Blood-based early detection of non-small cell lung cancer using orphan noncoding RNAs Karimzadeh, Mehran; Wang, Jeffrey; Sababi, Aiden; Afolabi, Oluwadamilare I.; Lam, Dung Ngoc; Huang, Alice; Corti, Diana R.; Garcia, Kristle C.; Kilinc, Seda; Zhao, Xuan; Wang, Jieyang; Cavazos, Taylor B.; Arensdorf, Patrick; Chau, Kimberly H.; Li, Helen; Goodarzi, Hani; Fish, Lisa; Hormozdiari, Fereydoun; Alipanahi, Babak Share Save
Orphan noncoding RNAs for early detection of breast cancer with liquid biopsy Cavazos, Taylor B.; Wang, Jeffrey; Afolabi, Oluwadamilare I.; Huang, Alice; Lam, Dung Ngoc; Kilinc, Seda; Wang, Jieyang; Fish, Lisa; Zhao, Xuan; Pohl, Andy; Li, Helen; Chau, Kimberly H.; Arensdorf, Patrick A.; Hormozdiari, Fereydoun; Goodarzi, Hani; Alipanahi, Babak Share Save
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Functional disease architectures reveal unique biological role of transposable elements Hormozdiari, Farhad; van de Geijn, Bryce; Nasser, Joseph; Weissbrod, Omer; Gazal, Steven; Ju, Chelsea J. -T.; O'Connor, Luke; Hujoel, Margaux L. A.; Engreitz, Jesse; Hormozdiari, Fereydoun; Price, Alkes L. Share Save
Multi-platform discovery of haplotype-resolved structural variation in human genomes Chaisson, Mark J. P.; Sanders, Ashley D.; Zhao, Xuefang; Malhotra, Ankit; Porubsky, David; Rausch, Tobias; Gardner, Eugene J.; Rodriguez, Oscar L.; Guo, Li; Collins, Ryan L.; Fan, Xian; Wen, Jia; Handsaker, Robert E.; Fairley, Susan; Kronenberg, Zev N.; Kong, Xiangmeng; Hormozdiari, Fereydoun; Lee, Dillon; Wenger, Aaron M.; Hastie, Alex R.; Antaki, Danny; Anantharaman, Thomas; Audano, Peter A.; Brand, Harrison; Cantsilieris, Stuart; Cao, Han; Cerveira, Eliza; Chen, Chong; Chen, Xintong; Chin, Chen-Shan; Chong, Zechen; Chuang, Nelson T.; Lambert, Christine C.; Church, Deanna M.; Clarke, Laura; Farrell, Andrew; Flores, Joey; Galeev, Timur; Gorkin, David U.; Gujral, Madhusudan; Guryev, Victor; Heaton, William Haynes; Korlach, Jonas; Kumar, Sushant; Kwon, Jee Young; Lam, Ernest T.; Lee, Jong Eun; Lee, Joyce; Lee, Wan-Ping; Lee, Sau Peng; Li, Shantao; Marks, Patrick; Viaud-Martinez, Karine; Meiers, Sascha; Munson, Katherine M.; Navarro, Fabio C. P.; Nelson, Bradley J.; Nodzak, Conor; Noor, Amina; Kyriazopoulou-Panagiotopoulou, Sofia; Pang, Andy W. C.; Qiu, Yunjiang; Rosanio, Gabriel; Ryan, Mallory; Stuetz, Adrian; Spierings, Diana C. J.; Ward, Alistair; Welch, AnneMarie E.; Xiao, Ming; Xu, Wei; Zhang, Chengsheng; Zhu, Qihui; Zheng-Bradley, Xiangqun; Lowy, Ernesto; Yakneen, Sergei; McCarroll, Steven; Jun, Goo; Ding, Li; Koh, Chong Lek; Ren, Bing; Flicek, Paul; Chen, Ken; Gerstein, Mark B.; Kwok, Pui-Yan; Lansdorp, Peter M.; Marth, Gabor T.; Sebat, Jonathan; Shi, Xinghua; Bashir, Ali; Ye, Kai; Devine, Scott E.; Talkowski, Michael E.; Mills, Ryan E.; Marschall, Tobias; Korbel, Jan O.; Eichler, Evan E.; Lee, Charles Share Save
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Neurodevelopmental disease genes implicated by de novo mutation and copy number variation morbidity Coe, Bradley P.; Stessman, Holly A. F.; Sulovari, Arvis; Geisheker, Madeleine R.; Bakken, Trygve E.; Lake, Allison M.; Dougherty, Joseph D.; Lein, Ed S.; Hormozdiari, Fereydoun; Bernier, Raphael A.; Eichler, Evan E. Share Save
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