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Daniel Sage

ecole polytechnique federale de lausanne

36H-index
125Paper Count
9.1KCitation Count
Published Papers 40
Publication Date
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SAMJ: fast image annotation on ImageJ/Fiji via segment anything model
errNature Communications
IF15.7
err2026-06-18
err0
errOAAI
errCarlos García-López-de-Haro; Caterina Fuster-Barceló; Curtis T. Rueden; Jónathan Heras; Vladimír Ulman; Daniel Franco-Barranco; Adrián Inés; Kevin W. Eliceiri; Jean-Christophe Olivo-Marin; Jean-Yves Tinevez; Daniel Sage; Arrate Muñoz-Barrutia
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errSave
Roadmap on deep learning for microscopy
errjournal of physics: photonics
IF0
err2026-01-29
err0
errOAAI
errGiovanni Volpe; Carolina Wählby; Lei Tian; Michael Hecht; Artur Yakimovich; Kristina Monakhova; Laura Waller; Ivo F Sbalzarini; Christopher A Metzler; Mingyang Xie; Kevin Zhang; Isaac C D Lenton; Halina Rubinsztein-Dunlop; Daniel Brunner; Bijie Bai; Aydogan Ozcan; Daniel Midtvedt; Hao Wang; Tongyu Li; Nataša Sladoje; Joakim Lindblad; Jason T Smith; Marien Ochoa; Margarida Barroso; Xavier Intes; Tong Qiu; Li-Yu Yu; Sixian You; Yongtao Liu; Maxim A Ziatdinov; Sergei V Kalinin; Arlo Sheridan; Uri Manor; Elias Nehme; Ofri Goldenberg; Yoav Shechtman; Henrik K Moberg; Christoph Langhammer; Barbora Špačková; Saga Helgadottir; Benjamin Midtvedt; Aykut Argun; Tobias Thalheim; Frank Cichos; Stefano Bo; Lars Hubatsch; Jesus Pineda; Carlo Manzo; Harshith Bachimanchi; Erik Selander; Antoni Homs-Corbera; Martin Fränzl; Kevin de Haan; Yair Rivenson; Zofia Korczak; Caroline Beck Adiels; Mite Mijalkov; Dániel Veréb; Yu-Wei Chang; Joana B Pereira; Damian Matuszewski; Gustaf Kylberg; Ida-Maria Sintorn; Juan C Caicedo; Beth A Cimini; Muyinatu A Lediju Bell; Bruno M Saraiva; Guillaume Jacquemet; Ricardo Henriques; Wei Ouyang; Trang Le; Estibaliz Gómez-de-Mariscal; Daniel Sage; Arrate Muñoz-Barrutia; Ebba Josefson Lindqvist; Johanna Bergman
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Revisiting PSF models: Unifying framework and high-performance implementation
errJournal of Microscopy
IF1.9
err2025-11-01
err0
errOAAI
errLiu, Yan; Stergiopoulou, Vasiliki; Chuah, Jonathan; Bezzam, Eric; Both, Gert-Jan; Unser, Michael; Sage, Daniel; Dong, Jonathan
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errSave
Machine learning in microscopy - insights, opportunities and challenges
errJOURNAL OF CELL SCIENCE
IF3.6
err2024-10-28
err3
PREAI
errCunha, Ines; Latron, Emma; Bauer, Sebastian; Sage, Daniel; Griffie, Juliette
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errSave
Back to the future-20 years of progress and developments in photonic microscopy and biological imaging
errJOURNAL OF CELL SCIENCE
IF3.6
err2024-10-28
err0
PREAI
errErard, Marie; Favard, Cyril; Lavis, Luke D.; Recher, Gaelle; Rigneault, Herve; Sage, Daniel
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errSave
JDLL: a library to run deep learning models on Java bioimage informatics platforms
errNATURE METHODS
IF32.1
err2024-01-08
err1
errOAAI
errde Haro, Carlos Garcia Lopez; Dallongeville, Stephane; Musset, Thomas; Gomez-de-Mariscal, Estibaliz; Sage, Daniel; Ouyang, Wei; Munoz-Barrutia, Arrate; Tinevez, Jean-Yves; Olivo-Marin, Jean-Christophe
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A framework for evaluating the performance of SMLM cluster analysis algorithms
errNATURE METHODS
IF32.1
err2023-02-10
err19
errOAAI
errNieves, Daniel J.; Pike, Jeremy A.; Levet, Florian; Williamson, David J.; Baragilly, Mohammed; Oloketuyi, Sandra; de Marco, Ario; Griffie, Juliette; Sage, Daniel; Cohen, Edward A. K.; Sibarita, Jean-Baptiste; Heilemann, Mike; Owen, Dylan M.
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errSave
Correction of multiple-blinking artifacts in photoactivated localization microscopy
errNATURE METHODS
IF32.1
err2022-05-11
err19
PREAI
errJensen, Louis G.; Hoh, Tjun Yee; Williamson, David J.; Griffie, Juliette; Sage, Daniel; Rubin-Delanchy, Patrick; Owen, Dylan M.
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errSave
A Practical Guide to Supervised Deep Learning for Bioimage Analysis: Challenges and good practices
errIEEE SIGNAL PROCESSING MAGAZINE
IF9.6
err2022-03-01
err7
PREAI
errUhlmann, Virginie; Donati, Laurene; Sage, Daniel
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errSave
DeepImageJ: A user-friendly environment to run deep learning models in ImageJ
errNATURE METHODS
IF32.1
err2021-09-30
err111
errOAAI
errGomez-de-Mariscal, Estibaliz; Garcia-Lopez-de-Haro, Carlos; Ouyang, Wei; Donati, Laurene; Lundberg, Emma; Unser, Michael; Munoz-Barrutia, Arrate; Sage, Daniel
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errSave
Deep Learning Enables Individual Xenograft Cell Classification in Histological Images by Analysis of Contextual Features
errJOURNAL OF MAMMARY GLAND BIOLOGY AND NEOPLASIA
IF3.6
err2021-05-17
err2
errOAAI
errJuppet, Quentin; De Martino, Fabio; Marcandalli, Elodie; Weigert, Martin; Burri, Olivier; Unser, Michael; Brisken, Cathrin; Sage, Daniel
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errSave
In pancreatic islets from type 2 diabetes patients, the dampened circadian oscillators lead to reduced insulin and glucagon exocytosis
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2020-01-21
err76
errOAAI
errPetrenko, Volodymyr; Gandasi, Nikhil R.; Sage, Daniel; Tengholm, Anders; Barg, Sebastian; Dibner, Charna
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errSave
Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software (vol 16, pg 387, 2019)
errNATURE METHODS
IF32.1
err2019-05-16
err1
errOAAI
errSage, Daniel; Thanh-An Pham; Babcock, Hazen; Lukes, Tomas; Pengo, Thomas; Chao, Jerry; Velmurugan, Ramraj; Herbert, Alex; Agrawal, Anurag; Colabrese, Silvia; Wheeler, Ann; Archetti, Anna; Rieger, Bernd; Ober, Raimund; Hagen, Guy M.; Sibarita, Jean-Baptiste; Ries, Jonas; Henriques, Ricardo; Unser, Michael; Holden, Seamus
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errSave
Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software
errNATURE METHODS
IF32.1
err2019-04-08
err236
errOAAI
errSage, Daniel; Thanh-An Pham; Babcock, Hazen; Lukes, Tomas; Pengo, Thomas; Chao, Jerry; Velmurugan, Ramraj; Herbert, Alex; Agrawal, Anurag; Colabrese, Silvia; Wheeler, Ann; Archetti, Anna; Rieger, Bernd; Ober, Raimund; Hagen, Guy M.; Sibarita, Jean-Baptiste; Ries, Jonas; Henriques, Ricardo; Unser, Michael; Holden, Seamus
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Achieving high-resolution thermal imagery in low-contrast lake surface waters by aerial remote sensing and image registration
errREMOTE SENSING OF ENVIRONMENT
IF11.4
err2019-02-01
err35
errOAAI
errRahaghi, Abolfazl Irani; Lemmin, Ulrich; Sage, Daniel; Barry, David Andrew
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Investigating Focal Adhesion Substructures by Localization Microscopy
errBIOPHYSICAL JOURNAL
IF3.1
err2017-12-01
err19
errOAAI
errDeschout, Hendrik; Platzman, Ilia; Sage, Daniel; Feletti, Lely; Spatz, Joachim P.; Radenovic, Aleksandra
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DeconvolutionLab2: An open-source software for deconvolution microscopy
errMETHODS
IF4.3
err2017-02-01
err427
errOAAI
errSage, Daniel; Donati, Laurene; Soulez, Ferreol; Fortun, Denis; Schmit, Guillaume; Seitz, Arne; Guiet, Romain; Vonesch, Cedric; Unser, Michael
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errSave
Parametric experimental study and design of experiment modelling of sapphire grinding
errJOURNAL OF CLEANER PRODUCTION
IF10
err2017-01-01
err17
errOAAI
errWasmer, K.; Pochon, P. -M.; Sage, D.; Giovanola, J. H.
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A simple, fast and low-cost method for in situ monitoring of topographical changes and wear rate of a complex tribo-system under mixed lubrication
errWEAR
IF6.1
err2016-10-01
err13
errOAAI
errMeylan, B.; Dogan, P.; Sage, D.; Wasmer, K.
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errSave
IMAGING Super-resolution fight club
errNATURE PHOTONICS
IF32.9
err2016-02-26
err11
errOAAI
errHolden, Seamus; Sage, Daniel
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errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
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Takeshi Iwatsubo
H-index: 114 · Papers: 714
S
Sergei V. Kalinin
H-index: 109 · Papers: 1.6K
P
Patrick Aebischer
H-index: 103 · Papers: 460
M
Michaël Unser
H-index: 100 · Papers: 1.0K
S
Susan M. Gasser
H-index: 97 · Papers: 380
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