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Y

Yingxin Lin

yale university

22H-index
101Paper Count
2.5KCitation Count
Published Papers 34
Publication Date
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Lineage and organ signals sequentially build organ intrinsic nervous systems
errNature
IF48.5
err2026-05-01
err0
PREAI
errHsu, I-Uen Yvonne; Zhao, Jia; Lin, Yingxin; Guo, Yunshan; Xu, Qian J.; Shao, Yuancheng; Wang, Ruiqi L.; Yin, Dominic; Ghoshal, Kakali; Mourad, Rida; Pozzi, Ambra; Halabi, Carmen M.; Young, Lawrence H.; Zhao, Hongyu; Zhang, Le; Chang, Rui B.
errShare
errSave
Leveraging cell-type specificity and similarity improves single-cell eQTL fine-mapping
errNature Communications
IF15.7
err2026-04-22
err0
errOAAI
errChen Lin; Yingxin Lin; Wenxuan Li; Leqi Xu; Xiangyu Zhang; Hongyu Zhao
errShare
errSave
Interpretable, flexible and spatially aware integration of multiple spatial transcriptomics datasets from diverse sources
errNature Genetics
IF29
err2026-04-01
err0
PREAI
errZhao, Jia; Zhang, Xiangyu; Wang, Gefei; Lin, Yingxin; Liu, Tianyu; Chang, Rui B.; Zhao, Hongyu
errShare
errSave
Central amygdala single-nucleus atlas reveals chromatin and gene transcription dynamics in human alcohol use disorder
errNature Communications
IF15.7
err2026-01-19
err0
errOAAI
errChe Yu Lee; Ahyeon Hwang; Delaney McRiley; Jaywon Lee; Genevieve Thibodeau; Catharine Duman; Xiangyu Zhang; Mario Skarica; Jensine Coudriet; Siwei Xu; Rosemarie Terwilliger; Alexa-Nicole Sliby; Jiawei Wang; Tuan Nguyen; Yujing Liu; Hongyu Li; Yi Dai; Ziheng Duan; Yutong Lei; Yingxin Lin; Jill R. Glausier; David A. Lewis; Joel Gelernter; Paul E. Holtzheimer; Ke Xu; Hang Zhou; Hongyu Zhao; Summer Thompson; John H. Krystal; Alicia Che; Jane R. Taylor; Jing Zhang; Matthew J. Girgenti
errShare
errSave
Chromosome-level genome assembly and annotation of the tropical sea cucumber Bohadschia ocellate
errScientific Data
IF6.9
err2025-12-17
err0
errOAAI
errQianying Huang; Xuan Wang; Zhou Qin; Dingding Fan; Hua Ge; Yingxin Lin; Junyan Wang; Yun Yang; Zhenyu Xie; Da Huo; Chang Chen; Haipeng Qin; Xiaoli Zhang; Xiangxing Zhu; Dongsheng Tang; Chunhua Ren; Chaoqun Hu; Ting Chen; Aifen Yan
errShare
errSave
Improving polygenic risk prediction performance by integrating electronic health records through phenotype embedding
errThe American Journal of Human Genetics
IF0
err2025-12-04
err0
PREAI
errLeqi Xu; Wangjie Zheng; Jiaqi Hu; Yingxin Lin; Jia Zhao; Gefei Wang; Tianyu Liu; Hongyu Zhao
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errSave
Spatial dynamics of brain development and neuroinflammation
errNature
IF48.5
err2025-11-05
err0
errOAAI
errDi Zhang; Leslie A. Rubio Rodríguez-Kirby; Yingxin Lin; Wenqi Wang; Mengyi Song; Li Wang; Lijun Wang; Shigeaki Kanatani; Tony Jimenez-Beristain; Yonglong Dang; Mei Zhong; Petra Kukanja; Shuozhen Bao; Shaohui Wang; Xinyi Lisa Chen; Fu Gao; Dejiang Wang; Hang Xu; Cong Ma; Xing Lou; Yang Liu; Jinmiao Chen; Nenad Sestan; Per Uhlén; Arnold Kriegstein; Hongyu Zhao; Gonçalo Castelo-Branco; Rong Fan
errShare
errSave
UNICORN: Towards universal cellular expression prediction with a multi-task learning framework
errNature Communications
IF15.7
err2025-10-27
err0
errOAAI
errTianyu Liu; Tinglin Huang; Lijun Wang; Yingxin Lin; Rex Ying; Hongyu Zhao
errShare
errSave
The current landscape and emerging challenges of benchmarking single-cell methods
errBRIEFINGS IN BIOINFORMATICS
IF7.7
err2025-09-01
err0
errOAAI
errCao, Yue; Yu, Lijia; Torkel, Marni; Kim, Sanghyun; Lin, Yingxin; Yang, Pengyi; Speed, Terence P.; Ghazanfar, Shila; Yang, Jean Yee Hwa
errShare
errSave
Interpretable Differential Abundance Signature (iDAS)
errSMALL METHODS
IF9.1
err2025-05-27
err0
errOAAI
errYu, Lijia; Lin, Yingxin; Xu, Xiangnan; Yang, Pengyi
errShare
errSave
Pt loaded CoFe2O4-based nanoparticles for breast cancer treatment with chemodynamic therapy and sonodynamic therapy
errCERAMICS INTERNATIONAL
IF5.6
err2025-01-01
err0
PREAI
errXie, Zhenze; Huang, Yucheng; Wang, Jingguang; Guo, Wenxin; Lin, Yutao; Lin, Yingxin; Du, Chang
errShare
errSave
Antecedent Cardiac Arrest Status of Donation After Circulatory Determination of Death (DCDD) Kidney Donors and the Risk of Delayed Graft Function After Kidney Transplantation: A Cohort Study
errTRANSPLANTATION
IF5
err2024-09-24
err0
PREAI
errPhilipoff, Adam; Lin, Yingxin; Teixeira-Pinto, Armando; Gately, Ryan; Craig, Jonathan C.; Opdam, Helen; Chapman, Jeremy C.; Pleass, Henry; Rogers, Natasha M.; Davies, Christopher E.; McDonald, Stephen; Yang, Jean; Lopez, Pedro; Wong, Germaine; Lim, Wai H.
errShare
errSave
Single-cell RNA sequencing reveals melanoma cell state- dependent heterogeneity of response to MAPK inhibitors
errEBIOMEDICINE
IF10.8
err2024-09-01
err0
errOAAI
errLim, Su Yin; Lin, Yingxin; Lee, Jenny H.; Pedersen, Bernadette; Stewart, Ashleigh; Scolyer, Richard A.; Long, Georgina V.; Yang, Jean Y. H.; Rizos, Helen
errShare
errSave
SANTO: a coarse-to-fine alignment and stitching method for spatial omics
errNATURE COMMUNICATIONS
IF15.7
err2024-07-18
err0
errOAAI
errLi, Haoyang; Lin, Yingxin; He, Wenjia; Han, Wenkai; Xu, Xiaopeng; Xu, Chencheng; Gao, Elva; Zhao, Hongyu; Gao, Xin
errShare
errSave
BIDCell: Biologically-informed self-supervised learning for segmentation of subcellular spatial transcriptomics data
errNATURE COMMUNICATIONS
IF15.7
err2024-01-13
err8
errOAAI
errFu, Xiaohang; Lin, Yingxin; Lin, David M.; Mechtersheimer, Daniel; Wang, Chuhan; Ameen, Farhan; Ghazanfar, Shila; Patrick, Ellis; Kim, Jinman; Yang, Jean Y. H.
errShare
errSave
Data integration and inference of gene regulation using single-cell temporal multimodal data with scTIE
errGENOME RESEARCH
IF5.5
err2023-12-15
err1
errOAAI
errLin, Yingxin; Wu, Tung-Yu; Chen, Xi; Wan, Sheng; Chao, Brian; Xin, Jingxue; Yang, Jean Y. H.; Wong, Wing H.; Wang, Y. X. Rachel
errShare
errSave
Gene regulatory network reconstruction: harnessing the power of single-cell multi-omic data
errNPJ SYSTEMS BIOLOGY AND APPLICATIONS
IF3.5
err2023-10-19
err23
errOAAI
errKim, Daniel; Tran, Andy; Kim, Hani Jieun; Lin, Yingxin; Yang, Jean Yee Hwa; Yang, Pengyi
errShare
errSave
simKAP: simulation framework for the kidney allocation process with decision making model
errSCIENTIFIC REPORTS
IF3.9
err2023-09-29
err1
errOAAI
errZhang, Yunwei; Hu, Anne; Lin, Yingxin; Cao, Yue; Muller, Samuel; Wong, Germaine; Yang, Jean Yee Hwa
errShare
errSave
Atlas-scale single-cell multi-sample multi-condition data integration using scMerge2
errNATURE COMMUNICATIONS
IF15.7
err2023-07-17
err7
errOAAI
errLin, Yingxin; Cao, Yue; Willie, Elijah; Patrick, Ellis; Yang, Jean Y. H.
errShare
errSave
Trajectories of systolic blood pressure decline in kidney transplant donors prior to circulatory death and delayed graft function
errCLINICAL KIDNEY JOURNAL
IF4.6
err2023-03-15
err2
errOAAI
errLin, Yingxin; Teixeira-Pinto, Armando; Craig, Jonathan C.; Opdam, Helen; Chapman, Jeremy C.; Pleass, Henry; Carter, Angus; Rogers, Natasha M.; Davies, Christopher E.; McDonald, Stephen; Yang, Jean; Lim, Wai H.; Wong, Germaine
errShare
errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
G
Georgina V. Long
H-index: 169 · Papers: 1.8K
J
John H. Krystal
H-index: 157 · Papers: 1.0K
R
Richard A. Scolyer
H-index: 141 · Papers: 1.7K
J
Jonathan C. Craig
H-index: 136 · Papers: 1.5K
D
David W. Johnson
H-index: 134 · Papers: 2.1K
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