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C

Chirag Jain

indian institute of science (iisc) - bangalore

18H-index
79Paper Count
1.1WCitation Count
Published Papers 10
Publication Date
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Pangenome-based genome inference using integer programming
errGENOME RESEARCH
IF5.5
err2025-12-01
err1
PREAI
errChandra, Ghanshyam; Hossen, Md Helal; Scholz, Stephan; Dilthey, Alexander T.; Gibney, Daniel; Jain, Chirag
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On the Coverage Required for Diploid Genome Assembly
errIEEE Transactions on Computational Biology and Bioinformatics
IF0
err2025-11-01
err0
PREAI
errMahajan, Daanish; Jain, Chirag; Kashyap, Navin
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errSave
FastAAI: efficient estimation of genome average amino acid identity and phylum-level relationships using tetramers of universal proteins
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-04-26
err0
errOAAI
errGerhardt, Kenji; Ruiz-Perez, Carlos A.; Rodriguez-R, Luis M.; Jain, Chirag; Tiedje, James M.; Cole, James R.
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errSave
Telomere-to-telomere assembly by preserving contained reads
errGENOME RESEARCH
IF5.5
err2024-10-15
err0
errOAAI
errKamath, Sudhanva Shyam; Bindra, Mehak; Pal, Debnath; Jain, Chirag
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errSave
Critical review on the developments in polymer composite materials for biomedical implants
errJOURNAL OF BIOMATERIALS SCIENCE-POLYMER EDITION
IF3.6
err2022-11-18
err6
PREAI
errJain, Chirag; Surabhi, Prabhav; Marathe, Kumudinee
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Long-read mapping to repetitive reference sequences using Winnowmap2
errNATURE METHODS
IF32.1
err2022-04-01
err88
errOAAI
errJain, Chirag; Rhie, Arang; Hansen, Nancy F.; Koren, Sergey; Phillippy, Adam M.
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errSave
Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies
errNATURE METHODS
IF32.1
err2022-03-31
err48
errOAAI
errCartney, Ann M. Mc; Shafin, Kishwar; Alonge, Michael; Bzikadze, Andrey, V; Formenti, Giulio; Fungtammasan, Arkarachai; Howe, Kerstin; Jain, Chirag; Koren, Sergey; Logsdon, Glennis A.; Miga, Karen H.; Mikheenko, Alla; Paten, Benedict; Shumate, Alaina; Soto, Daniela C.; Sovic, Ivan; Wood, Jonathan Md; Zook, Justin M.; Phillippy, Adam M.; Rhie, Arang
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errSave
Accelerating minimap2 for long-read sequencing applications on modern CPUs
errNATURE COMPUTATIONAL SCIENCE
IF18.3
err2022-02-28
err27
PREAI
errKalikar, Saurabh; Jain, Chirag; Vasimuddin, Md; Misra, Sanchit
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errSave
Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps
errNATURE COMMUNICATIONS
IF15.7
err2019-07-11
err98
errOAAI
errDilthey, Alexander T.; Jain, Chirag; Koren, Sergey; Phillippy, Adam M.
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errSave
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
errNATURE COMMUNICATIONS
IF15.7
err2018-11-30
err2.9K
errOAAI
errJain, Chirag; Rodriguez-R, Luis M.; Phillippy, Adam M.; Konstantinidis, Konstantinos T.; Aluru, Srinivas
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errSave

Research Directions

The data has not been retrieved yet.
Co-authors
Cooperation Journals
J
James M. Tiedje
H-index: 171 · Papers: 773
B
Benedict Paten
H-index: 95 · Papers: 355
A
Adam M. Phillippy
H-index: 94 · Papers: 341
S
Sergey Koren
H-index: 87 · Papers: 316
K
Konstantinos T. Konstantinidis
H-index: 75 · Papers: 422
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