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D

Daofeng Li

Washington University School of Medicine

43H-index
156Paper Count
1.5WCitation Count
Published Papers 65
Publication Date
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Single-cell multiomics and chromatin structure reveal gene-regulatory dynamics in heart failure
errScience
IF45.8
err2026-07-23
err0
PREAI
errYang Xie; Luca Tucciarone; Elie N. Farah; Lei Chang; Qian Yang; Thirupura S. Shankar; Weston Elison; Shaina Tran; Jovina Djulamsah; Audrey Lie; Timothy Loe; Alyssa R. Holman; Sierra Corban; Justin Buchanan; Sainath Mamde; Haowen Zhou; Ruth M. Elgamal; Eleni Tseliou; Vincent Huang; Zhaoning Wang; Jeffrey Huey-Chuan Chiu; Rebecca Melton; Emily Griffin; Qingquan Zhang; Jacinta Lucero; Sutip Navankasattusas; Daofeng Li; Chanrung Seng; Eugin Destici; Craig H. Selzman; Agnieszka D’Antonio-Chronowska; Ting Wang; Allen Wang; Stavros G. Drakos; Kyle J. Gaulton; Bing Ren; Neil C. Chi
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errSave
Single-cell analysis of the epigenome and 3D chromatin architecture in the human retina
errScience Advances
IF12.5
err2026-07-23
err0
errOAAI
errYing Yuan; Pooja Biswas; Nathan R. Zemke; Kelsey Dang; Yue Wu; Matteo D’Antonio; Yang Xie; Qian Yang; Keyi Dong; Pik Ki Lau; Daofeng Li; Chanrung Seng; Weronika Bartosik; Justin Buchanan; Lin Lin; Ryan Lancione; Kangli Wang; Seoyeon Lee; Zane Gibbs; Bing Yang; Joseph R. Ecker; Kelly Frazer; Ting Wang; Sebastian Preissl; Allen Wang; Radha Ayyagari; Bing Ren
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errSave
Epigenetic and 3D genome reprogramming during the aging of the human hippocampus
errScience
IF45.8
err2026-07-23
err0
PREAI
errNathan R. Zemke; Seoyeon Lee; Sainath Mamde; Bing Yang; Nicole Berchtold; B. Maximiliano Garduño; Hannah S. Indralingam; Weronika M. Bartosik; Pik Ki Lau; Keyi Dong; Emily Hsu; Amanda Yang; Yasmine Tani; Chumo Chen; Qiurui Zeng; Varun Ajith; Liqi Tong; Chanrung Seng; Daofeng Li; Ting Wang; Jingtian Zhou; Joseph R. Ecker; Christopher K. Glass; Carl W. Cotman; Xiangmin Xu; Bing Ren
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errSave
ToxiTaRGET: a multi-omics database for toxicant-responsive molecular targets
errNature Communications
IF15.7
err2026-05-29
err0
errOAAI
errRavindra Kumar; Tianyi Fu; Prashant Kumar Kuntala; Benpeng Miao; Shuhua Fu; Daofeng Li; Frederick L. Tyson; Marisa S. Bartolomei; Cheryl L. Walker; Ting Wang; Bo A. Zhang
errShare
errSave
Benchmarking genome choice in functional genomics analyses
errNature Communications
IF15.7
err2026-05-26
err0
errOAAI
errJuan F. Macias-Velasco; Xiaoyu Zhuo; Chad Tomlinson; Eddie A. Belter; Milinn Kremitzki; Derek Albracht; Tina Lindsay; Xiaoyun Xing; Nina Tekkey; Wenjin Zhang; John E. Garza; Zheng Xu; Zilan Xin; Qichen Fu; Heather A. Lawson; Nathan O. Stitziel; Robert S. Fulton; Daofeng Li; Ting Wang
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errSave
TaRGET II Data Portal: a multi-omics resource for environmental toxicant studies in mice
errNature Communications
IF15.7
err2026-05-19
err0
errOAAI
errPrashant K. Kuntala; Benpeng Miao; Deepak Purushotham; Bo Zhang; Daofeng Li; Ting Wang
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errSave
An integrated view of the structure and function of the human 4D nucleome
errNature
IF48.5
err2025-12-17
err0
errOAAI
errJob Dekker; Betul Akgol Oksuz; Yang Zhang; Ye Wang; Miriam K. Minsk; Shuzhen Kuang; Liyan Yang; Johan H. Gibcus; Nils Krietenstein; Oliver J. Rando; Jie Xu; Derek H. Janssens; Steven Henikoff; Alexander Kukalev; Willemin Andréa; Warren Winick-Ng; Rieke Kempfer; Ana Pombo; Miao Yu; Pradeep Kumar; Liguo Zhang; Andrew S. Belmont; Takayo Sasaki; Tom van Schaik; Laura Brueckner; Daan Peric-Hupkes; Bas van Steensel; Ping Wang; Haoxi Chai; Minji Kim; Yijun Ruan; Ran Zhang; Sofia A. Quinodoz; Prashant Bhat; Mitchell Guttman; Wenxin Zhao; Shu Chien; Yuan Liu; Sergey V. Venev; Dariusz Plewczynski; Ibai Irastorza Azcarate; Dominik Szabó; Christoph J. Thieme; Teresa Szczepińska; Mateusz Chiliński; Kaustav Sengupta; Mattia Conte; Andrea Esposito; Alex Abraham; Ruochi Zhang; Yuchuan Wang; Xingzhao Wen; Qiuyang Wu; Yang Yang; Jie Liu; Lorenzo Boninsegna; Asli Yildirim; Yuxiang Zhan; Andrea Maria Chiariello; Simona Bianco; Lindsay Lee; Ming Hu; Yun Li; R. Jordan Barnett; Ashley L. Cook; Daniel J. Emerson; Claire Marchal; Peiyao Zhao; Peter J. Park; Burak H. Alver; Andrew J. Schroeder; Rahi Navelkar; Clara Bakker; William Ronchetti; Shannon Ehmsen; Alexander D. Veit; Nils Gehlenborg; Ting Wang; Daofeng Li; Xiaotao Wang; Mario Nicodemi; Bing Ren; Sheng Zhong; Jennifer E. Phillips-Cremins; David M. Gilbert; Katherine S. Pollard; Frank Alber; Jian Ma; William S. Noble; Feng Yue
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errSave
The IGVF catalog-from genetic variation to function
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-12-01
err1
PREAI
errLi, Daofeng; Liu, Shane; Assis, Pedro R.; Li, Mingjie; Dong, Shengcheng; Whaling, Ian; Jolanki, Otto; Kagda, Meenakshi; Zhang, Wenjin; Macias-Velasco, Juan F.; Liu, Tianjie; Cody, Sarah; Antonacci-Fulton, Lucinda; Huang, Yuanhao; Liu, Jie; Montgomery, Michael T.; Zeiberg, Daniel; Jain, Shantanu; Pejaver, Vikas; Bergquist, Timothy; Chen, Yile; Radivojac, Predrag; Gersbach, Charles A.; Sherpa, Rintsen N.; Castro, Christopher P.; Boyle, Alan P.; Starita, Lea M.; Fowler, Douglas M.; Ahituv, Nadav; Dey, Kushal K.; Majoros, William H.; Reddy, Timothy E.; Craven, Mark; Sinha, Riya; Sverchkov, Yuriy; Cai, Xiangmeng; Nzima, Mpathi Z.; Calderwood, Michael A.; Rozowsky, Joel; Gerstein, Mark; Ma, Jian; Yue, Feng; Cherry, J. Michael; Love, Michael, I; Engreitz, Jesse M.; Hitz, Benjamin C.; Wang, Ting
errShare
errSave
WashU Epigenome Browser update 2025
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-05-05
err0
errOAAI
errSeng, Chanrung; Liu, Shane; Zhang, Wenjin; Zhuo, Xiaoyu; Li, Daofeng; Wang, Ting
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errSave
EPIGENETIC THERAPY POTENTIATES TRANSPOSABLE ELEMENT TRANSCRIPTION TO CREATE TUMOR-ENRICHED ANTIGENS IN GLIOBLASTOMA
errNEURO-ONCOLOGY
IF13.4
err2024-11-11
err0
PREAI
errJang, H. Josh; Shah, Nakul M.; Maeng, Ju Heon; Liang, Yonghao; Basri, Noah L.; Ge, Jiaxin; Qu, Xuan; Mahlokozera, Tatenda; Tzeng, Shin-Cheng; Williams, Russell B.; Moore, Michael J.; Annamalai, Devi; Chen, Justin Y.; Lee, Hyung Joo; Desouza, Patrick A.; Li, Daofeng; Xing, Xiaoyun; Kim, Albert H.; Wang, Ting
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errSave
Epigenetic therapy potentiates transposable element transcription to create tumor-enriched antigens in glioblastoma cells
errNATURE GENETICS
IF31.8
err2024-09-02
err1
PREAI
errJang, H. Josh; Shah, Nakul M.; Maeng, Ju Heon; Liang, Yonghao; Basri, Noah L.; Ge, Jiaxin; Qu, Xuan; Mahlokozera, Tatenda; Tzeng, Shin-Cheng; Williams, Russell B.; Moore, Michael J.; Annamalai, Devi; Chen, Justin Y.; Lee, Hyung Joo; DeSouza, Patrick A.; Li, Daofeng; Xing, Xiaoyun; Kim, Albert H.; Wang, Ting
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errSave
Modbed track: Visualization of modified bases in single-molecule sequencing
errCELL GENOMICS
IF9
err2023-12-01
err0
errOAAI
errLi, Daofeng; Zhuo, Xiaoyu; Harrison, Jessica K.; Liu, Shane; Wang, Ting
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errSave
Novel Edge Computing-Based Privacy-Preserving Approach for Smart Healthcare Systems in the Internet of Medical Things
errJOURNAL OF GRID COMPUTING
IF2.9
err2023-11-10
err6
PREAI
errMeng, Lingbin; Li, Daofeng
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errSave
TET3 plays a critical role in white adipose development and diet-induced remodeling
errCELL REPORTS
IF6.9
err2023-10-01
err1
errOAAI
errJung, Byung Chul; You, Dongjoo; Lee, Ikjun; Li, Daofeng; Schill, Rebecca L.; Ma, Katherine; Pi, Anna; Song, Zehan; Mu, Wei-Chieh; Wang, Ting; Macdougald, Ormond A.; Banks, Alexander S.; Kang, Sona
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errSave
Embryonic vitamin D deficiency programs hematopoietic stem cells to induce type 2 diabetes
errNATURE COMMUNICATIONS
IF15.7
err2023-06-13
err7
errOAAI
errOh, Jisu; Riek, Amy E.; Bauerle, Kevin T.; Dusso, Adriana; McNerney, Kyle P.; Barve, Ruteja A.; Darwech, Isra; Sprague, Jennifer E.; Moynihan, Clare; Zhang, Rong M.; Kutz, Greta; Wang, Ting; Xing, Xiaoyun; Li, Daofeng; Mrad, Marguerite; Wigge, Nicholas M.; Castelblanco, Esmeralda; Collin, Alejandro; Bambouskova, Monika; Head, Richard D.; Sands, Mark S.; Bernal-Mizrachi, Carlos
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errSave
Comparing genomic and epigenomic features across species using the WashU Comparative Epigenome Browser
errGENOME RESEARCH
IF5.5
err2023-05-08
err4
errOAAI
errZhuo, Xiaoyu; Hsu, Silas; Purushotham, Deepak; Kuntala, Prashant Kumar; Harrison, Jessica K.; Du, Alan Y.; Chen, Samuel; Li, Daofeng; Wang, Ting
errShare
errSave
Pan-cancer analysis identifies tumor-specific antigens derived from transposable elements
errNATURE GENETICS
IF31.8
err2023-03-27
err49
PREAI
errShah, Nakul M.; Jang, H. Josh; Liang, Yonghao; Maeng, Ju Heon; Tzeng, Shin-Cheng; Wu, Angela; Basri, Noah L.; Qu, Xuan; Fan, Changxu; Li, Amy; Katz, Benjamin; Li, Daofeng; Xing, Xiaoyun; Evans, Bradley S.; Wang, Ting
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errSave
The dynseq browser track shows context-specific features at nucleotide resolution
errNATURE GENETICS
IF31.8
err2022-10-14
err3
errOAAI
errNair, Surag; Barrett, Arjun; Li, Daofeng; Raney, Brian J.; Lee, Brian T.; Kerpedjiev, Peter; Ramalingam, Vivekanandan; Pampari, Anusri; Lekschas, Fritz; Wang, Ting; Haeussler, Maximilian; Kundaje, Anshul
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errSave
Exploring genomic data coupled with 3D chromatin structures using the WashU Epigenome Browser
errNATURE METHODS
IF32.1
err2022-07-21
err10
errOAAI
errLi, Daofeng; Harrison, Jessica K.; Purushotham, Deepak; Wang, Ting
errShare
errSave
WashU Epigenome Browser update 2022
errNUCLEIC ACIDS RESEARCH
IF13.1
err2022-04-12
err66
errOAAI
errLi, Daofeng; Purushotham, Deepak; Harrison, Jessica K.; Hsu, Silas; Zhuo, Xiaoyu; Fan, Changxu; Liu, Shane; Xu, Vincent; Chen, Samuel; Xu, Jason; Ouyang, Shinyi; Wu, Angela S.; Wang, Ting
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errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
M
M Snyder
H-index: 210 · Papers: 3.3K
M
Mark Gerstein
H-index: 191 · Papers: 1.2K
M
Marco A. Marra
H-index: 190 · Papers: 1.3K
S
Steven J.M. Jones
H-index: 189 · Papers: 1.3K
D
David Haussler
H-index: 175 · Papers: 720
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