Oguzhan Begik - Publications, H-index & Citations

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Oguzhan Begik

crg

14H-index

48Paper Count

1.6KCitation Count

Published Papers 13

Publication Date

FIRST-seq: a nanopore-based cDNA sequencing platform for RNA modification and structure profiling

Genome Biology

IF9.4

2026-05-30

OAAI

Oguzhan Begik; Gregor Diensthuber; Ivana Borovska; John S. Mattick; Danny Incarnato; Eva Maria Novoa

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Disrupting tRNA modifications to target mitochondrial vulnerabilities in drug-resistant leukemia cells

Blood

IF23.1

2025-08-05

OAAI

Cornelius Pauli; Michael Kienhöfer; Maximilian Felix Blank; Oguzhan Begik; Christian Rohde; Sarah Miriam Naomi Zimmermann; Laura Werner; Daniel Heid; Fu Xu; Katharina Weidenauer; Sylvain Delaunay; Nadja Krall; Katrin Trunk; Duoduo Zhao; Fengbiao Zhou; Laia Llovera; Alexane Ollivier; Anke Heit-Mondrzyk; Uwe Platzbecker; Claudia Baldus

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Nano3P-seq: charting the coding and noncoding transcriptome at single-molecule resolution

Nature Protocols

IF16

2025-07-08

OAAI

Oguzhan Begik; Leszek P. Pryszcz; Adnan Muhammad Niazi; Eivind Valen; Eva Maria Novoa

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Toward the use of nanopore RNA sequencing technologies in the clinic: challenges and opportunities

NUCLEIC ACIDS RESEARCH

IF13.1

2025-03-08

OAAI

Katopodi, Xanthi-Lida; Begik, Oguzhan

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Native RNA nanopore sequencing reveals antibiotic-induced loss of rRNA modifications in the A- and P-sites

NATURE COMMUNICATIONS

IF15.7

2024-11-29

OAAI

Delgado-Tejedor, Anna; Medina, Rebeca; Begik, Oguzhan; Cozzuto, Luca; Lopez, Judith; Blanco, Sandra; Ponomarenko, Julia; Novoa, Eva Maria

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N6-methyladenosine modification is not a general trait of viral RNA genomes

NATURE COMMUNICATIONS

IF15.7

2024-03-11

OAAI

Baquero-Perez, Belinda; Yonchev, Ivaylo D.; Delgado-Tejedor, Anna; Medina, Rebeca; Puig-Torrents, Mireia; Sudbery, Ian; Begik, Oguzhan; Wilson, Stuart A.; Novoa, Eva Maria; Diez, Juana

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Nano3P-seq: transcriptome-wide analysis of gene expression and tail dynamics using end-capture nanopore cDNA sequencing

NATURE METHODS

IF32.1

2022-12-19

OAAI

Begik, Oguzhan; Diensthuber, Gregor; Liu, Huanle; Delgado-Tejedor, Anna; Kontur, Cassandra; Niazi, Adnan Muhammad; Valen, Eivind; Giraldez, Antonio J.; Beaudoin, Jean-Denis; Mattick, John S.; Novoa, Eva Maria

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Quantitative profiling of pseudouridylation dynamics in native RNAs with nanopore sequencing

NATURE BIOTECHNOLOGY

IF41.7

2021-05-13

168

OAAI

Begik, Oguzhan; Lucas, Morghan C.; Pryszcz, Leszek P.; Ramirez, Jose Miguel; Medina, Rebeca; Milenkovic, Ivan; Cruciani, Sonia; Liu, Huanle; Vieira, Helaine Graziele Santos; Sas-Chen, Aldema; Mattick, John S.; Schwartz, Schraga; Novoa, Eva Maria

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Molecular barcoding of native RNAs using nanopore sequencing and deep learning

GENOME RESEARCH

IF5.5

2020-09-09

OAAI

Smith, Martin A.; Ersavas, Tansel; Ferguson, James M.; Liu, Huanle; Lucas, Morghan C.; Begik, Oguzhan; Bojarski, Lilly; Barton, Kirston; Novoa, Eva Maria

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Integrative analyses of the RNA modification machinery reveal tissue- and cancer-specific signatures

GENOME BIOLOGY

IF9.4

2020-05-07

OAAI

Begik, Oguzhan; Lucas, Morghan C.; Liu, Huanle; Miguel Ramirez, Jose; Mattick, John S.; Maria Novoa, Eva

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Accurate detection of m6A RNA modifications in native RNA sequences

NATURE COMMUNICATIONS

IF15.7

2019-09-09

207

OAAI

Liu, Huanle; Begik, Oguzhan; Lucas, Morghan C.; Miguel Ramirez, Jose; Mason, Christopher E.; Wiener, David; Schwartz, Schraga; Mattick, John S.; Smith, Martin A.; Novoa, Eva Maria

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Deregulated APA and cancer specific APA isoforms

CANCER RESEARCH

IF16.6

2018-07-01

PREAI

Begik, Oguzhan; Ercan, Melda; Cingoz, Harun; Can, Tolga; Oyken, Merve; Erson-Bensan, Ayse Elif

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Alternative Polyadenylation Patterns for Novel Gene Discovery and Classification in Cancer

NEOPLASIA

IF7.7

2017-07-01

OAAI

Begik, Oguzhan; Oyken, Merve; Alican, Tuna Cinkilli; Can, Tolga; Erson-Bensan, Ayse Elif

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Research Directions