logo
CanyamAI summaries for academic research
language
MobileMobile
  • Phone FeatureWeChat Mini Program
EnglishEnglish
noticeNotice
BlogBlog
delete
arrow
Back
A

Adam Siepel

Cold Spring Harbor Laboratory

64H-index
203Paper Count
2.8WCitation Count
Published Papers 78
Publication Date
logo
Bayesian inference of tissue-migration histories in metastatic cancer from cell-lineage tracing data
errCell Genomics
IF9
err2026-03-30
err0
errOAAI
errStephen J. Staklinski; Armin Scheben; Lise M. Brault; Rebecca Hassett; Ryan N. Serio; Jiawei Xing; Dawid G. Nowak; Adam Siepel
errShare
errSave
GHIST 2024: The First Genomic History Inference Strategies Tournament
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2025-11-01
err0
PREAI
errStruck, Travis J.; Vaughn, Andrew H.; Daigle, Austin; Ray, Dylan D.; Noskova, Ekaterina; Sequeira, Jaison J.; Antonets, Svetlana; Alekseevskaya, Elizaveta; Grigoreva, Elizaveta; Raines, Evgenii; Mcmaster, Eilish S.; Kovacs, Toby G. L.; Ragsdale, Aaron P.; Moreno-Estrada, Andres; Lotterhos, Katie E.; Siepel, Adam; Gutenkunst, Ryan N.
errShare
errSave
Loss of BPTF restores estrogen response and suppresses metastasis of mammary tumors
errNature Communications
IF15.7
err2025-10-15
err0
errOAAI
errMichael F. Ciccone; Dhivyaa Anandan; Deeptiman Chatterjee; Chen Chen; Marygrace C. Trousdell; Rebecca Anderson; Steven M. Lewis; Mackenzie K. Callaway; Chris Z. Zhao; Amritha Varshini Hanasoge Somasundara; Suzanne Russo; Shih-Ting Yang; Yixin Zhao; Julie Ostrander; John E. Wilkinson; William C. K. Pomerantz; Adam Siepel; David L. Spector; Jessica Tollkuhn; Camila O. dos Santos
errShare
errSave
Clonal Lineage Tracing with Somatic Delivery of Recordable Barcodes Reveals Migration Histories of Metastatic Prostate Cancer
errCANCER DISCOVERY
IF33.3
err2024-07-05
err0
PREAI
errSerio, Ryan N.; Scheben, Armin; Lu, Billy; Gargiulo, Domenic V.; Patruno, Lucrezia; Buckholtz, Caroline L.; Chaffee, Ryan J.; Jibilian, Megan C.; Persaud, Steven G.; Staklinski, Stephen J.; Hassett, Rebecca; Brault, Lise M.; Ramazzotti, Daniele; Barbieri, Christopher E.; Siepel, Adam C.; Nowak, Dawid G.
errShare
errSave
Loss of BPTF restores estrogen-regulated programs and suppress metastatic development of mammary tumors
errCANCER RESEARCH
IF16.6
err2024-02-01
err0
PREAI
errChen, Chen; Ciccone, Michael F.; Trousdell, Marygrace C.; Chatterjee, Deeptiman; Zhao, Yixin; Lewis, Steven M.; Anandan, Dhivya; Wilkinson, John E.; Pomerantz, William C. K.; Siepel, Adam; dos Santos, Camila O.
errShare
errSave
Single-Cell Transcription Mapping of Murine and Human Mammary Organoids Responses to Female Hormones
errJOURNAL OF MAMMARY GLAND BIOLOGY AND NEOPLASIA
IF3.6
err2024-01-30
err2
errOAAI
errOrtiz, Jenelys Ruiz; Lewis, Steven M.; Ciccone, Michael; Chatterjee, Deeptiman; Henry, Samantha; Siepel, Adam; dos Santos, Camila O.
errShare
errSave
Domain-adaptive neural networks improve supervised machine learning based on simulated population genetic data
errPLOS GENETICS
IF3.7
err2023-11-07
err11
errOAAI
errMo, Ziyi; Siepel, Adam
errShare
errSave
Model-based characterization of the equilibrium dynamics of transcription initiation and promoter-proximal pausing in human cells
errNUCLEIC ACIDS RESEARCH
IF13.1
err2023-10-27
err2
errOAAI
errZhao, Yixin; Liu, Lingjie; Hassett, Rebecca; Siepel, Adam
errShare
errSave
Long-Read Sequencing Reveals Rapid Evolution of Immunity- and Cancer-Related Genes in Bats
errGENOME BIOLOGY AND EVOLUTION
IF2.8
err2023-09-20
err22
errOAAI
errScheben, Armin; Ramos, Olivia Mendivil; Kramer, Melissa; Goodwin, Sara; Oppenheim, Sara; Becker, Daniel J.; Schatz, Michael C.; Simmons, Nancy B.; Siepel, Adam; McCombie, W. Richard
errShare
errSave
Genomic analyses of transcription factor binding, histone acetylation, and gene expression reveal mechanistically distinct classes of estrogen-regulated promoters
errMOLECULAR AND CELLULAR BIOLOGY
IF2.7
err2023-03-27
err184
errOAAI
errKininis, Miltiadis; Chen, Benjamin S.; Diehl, Adam G.; Isaacs, Gary D.; Zhang, Tong; Siepel, Adam C.; Clark, Andrew G.; Kraus, W. Lee
errShare
errSave
Selective sweeps on different pigmentation genes mediate convergent evolution of island melanism in two incipient bird species
errPLOS GENETICS
IF3.7
err2022-11-01
err10
errOAAI
errCampagna, Leonardo; Mo, Ziyi; Siepel, Adam; Uy, J. Albert C.
errShare
errSave
Extreme purifying selection against point mutations in the human genome
errNATURE COMMUNICATIONS
IF15.7
err2022-07-25
err15
errOAAI
errDukler, Noah; Mughal, Mehreen R.; Ramani, Ritika; Huang, Yi-Fei; Siepel, Adam
errShare
errSave
A multiple alignment workflow shows the effect of repeat masking and parameter tuning on alignment in plants
errPLANT GENOME
IF3.8
err2022-04-13
err7
errOAAI
errWu, Yaoyao; Johnson, Lynn; Song, Baoxing; Romay, Cinta; Stitzer, Michelle; Siepel, Adam; Buckler, Edward; Scheben, Armin
errShare
errSave
A Deep-Learning Approach for Inference of Selective Sweeps from the Ancestral Recombination Graph
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2021-11-22
err28
errOAAI
errHejase, Hussein A.; Mo, Ziyi; Campagna, Leonardo; Siepel, Adam
errShare
errSave
ACE: a probabilistic model for characterizing gene-level essentiality in CRISPR screens
errGENOME BIOLOGY
IF9.4
err2021-09-23
err3
errOAAI
errHutton, Elizabeth R.; Vakoc, Christopher R.; Siepel, Adam
errShare
errSave
Characterization of Gene Expression Signatures for the Identification of Cellular Heterogeneity in the Developing Mammary Gland
errJOURNAL OF MAMMARY GLAND BIOLOGY AND NEOPLASIA
IF3.6
err2021-05-14
err15
errOAAI
errHenry, Samantha; Trousdell, Marygrace C.; Cyrill, Samantha L.; Zhao, Yixin; Feigman, Mary. J.; Bouhuis, Julia M.; Aylard, Dominik A.; Siepel, Adam; dos Santos, Camila O.
errShare
errSave
Genomic islands of differentiation in a rapid avian radiation have been driven by recent selective sweeps
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2020-11-16
err40
errOAAI
errHejase, Hussein A.; Salman-Minkov, Ayelet; Campagna, Leonardo; Hubisz, Melissa J.; Lovette, Irby J.; Gronau, Ilan; Siepel, Adam
errShare
errSave
Mapping gene flow between ancient hominins through demography-aware inference of the ancestral recombination graph
errPLOS GENETICS
IF3.7
err2020-08-06
err63
errOAAI
errHubisz, Melissa J.; Williams, Amy L.; Siepel, Adam
errShare
errSave
A community-maintained standard library of population genetic models
errELIFE
IF0
err2020-06-23
err82
errOAAI
errAdrion, Jeffrey R.; Cole, Christopher B.; Dukler, Noah; Galloway, Jared G.; Gladstein, Ariella L.; Gower, Graham; Kyriazis, Christopher C.; Ragsdale, Aaron P.; Tsambos, Georgia; Baumdicker, Franz; Carlson, Jedidiah; Cartwright, Reed A.; Durvasula, Arun; Gronau, Ilan; Kim, Bernard Y.; McKenzie, Patrick; Messer, Philipp W.; Noskova, Ekaterina; Ortega-Del Vecchyo, Diego; Racimo, Fernando; Struck, Travis J.; Gravel, Simon; Gutenkunst, Ryan N.; Lohmueller, Kirk E.; Ralph, Peter L.; Schrider, Daniel R.; Siepel, Adam; Kelleher, Jerome; Kern, Andrew D.
errShare
errSave
From Summary Statistics to Gene Trees: Methods for Inferring Positive Selection
errTRENDS IN GENETICS
IF16.3
err2020-04-01
err24
errOAAI
errHejase, Hussein A.; Dukler, Noah; Siepel, Adam
errShare
errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
E
Eric S. Lander
H-index: 271 · Papers: 897
M
Marco A. Marra
H-index: 190 · Papers: 1.3K
R
Richard A. Gibbs
H-index: 190 · Papers: 1.3K
S
Steven J.M. Jones
H-index: 189 · Papers: 1.3K
D
David Haussler
H-index: 175 · Papers: 720
View more